Gene: Col5a1 (collagen type V alpha 1 chain) Rattus norvegicus
Analyze
Symbol: Col5a1
Name: collagen type V alpha 1 chain
Description: Exhibits heparin binding activity; predicted to be involved in several processes, including animal organ development, cell adhesion, and circulatory system development; predicted to localize to the basement membrane, collagen type V trimer, and extracellular space; orthologous to human COL5A1 (collagen type V alpha 1 chain); PARTICIPATES IN syndecan signaling pathway; cell-extracellular matrix signaling pathway; Entamoebiasis pathway; INTERACTS WITH (S)-10-[(DIMETHYLAMINO)METHYL]-4-ETHYL-4,9-DIHYDROXY-1H-PYRANO[3',4':6,7]INOLIZINO[1,2-B]-QUINOLINE-3,14(4H,12H)-DIONE; 1-naphthyl isothiocyanate; 17alpha-ethynylestradiol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: collagen alpha 1 (V); collagen alpha-1(V) chain; collagen, type V, alpha 1; procollagen, type V, alpha 1
Orthologs:
Homo sapiens (human) : COL5A1 (collagen type V alpha 1 chain)  HGNC  Alliance
Mus musculus (house mouse) : Col5a1 (collagen, type V, alpha 1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Col5a1 (collagen type V alpha 1 chain)
Pan paniscus (bonobo/pygmy chimpanzee) : COL5A1 (collagen type V alpha 1 chain)
Canis lupus familiaris (dog) : COL5A1 (collagen type V alpha 1 chain)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Col5a1 (collagen type V alpha 1 chain)
Sus scrofa (pig) : COL5A1 (collagen type V alpha 1 chain)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.036,430,180 - 6,581,010 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0311,788,675 - 11,937,880 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.436,826,169 - 6,971,054 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.136,826,468 - 6,971,354 (+)NCBI
Celera36,002,130 - 6,146,263 (+)NCBICelera
Cytogenetic Map3p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 5.0)

Additional Information

External Database Links
Nomenclature History
RGD Curation Notes
 
More on Col5a1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 70920
Created: 2002-07-09
Species: Rattus norvegicus
Last Modified: 2019-04-23
Status: ACTIVE



NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.