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Gene: Col5a2 (collagen type V alpha 2 chain) Rattus norvegicus
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Symbol: Col5a2
Name: collagen type V alpha 2 chain
Description: Predicted to have SMAD binding activity and extracellular matrix structural constituent. Involved in ossification. Predicted to localize to the collagen type V trimer and extracellular space. Human ortholog(s) of this gene implicated in Ehlers-Danlos syndrome. Orthologous to human COL5A2 (collagen type V alpha 2 chain); PARTICIPATES IN syndecan signaling pathway; cell-extracellular matrix signaling pathway; Entamoebiasis pathway; INTERACTS WITH (S)-10-[(DIMETHYLAMINO)METHYL]-4-ETHYL-4,9-DIHYDROXY-1H-PYRANO[3',4':6,7]INOLIZINO[1,2-B]-QUINOLINE-3,14(4H,12H)-DIONE; 1-naphthyl isothiocyanate; 17alpha-ethynylestradiol.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: collagen alpha-2(V) chain; collagen type V alpha 2; collagen, type V, alpha 2; procollagen, type V, alpha 2
Orthologs:
Homo sapiens (human) : COL5A2 (collagen type V alpha 2 chain)  HGNC  Alliance
Mus musculus (house mouse) : Col5a2 (collagen, type V, alpha 2)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Col5a2 (collagen type V alpha 2 chain)
Pan paniscus (bonobo/pygmy chimpanzee) : COL5A2 (collagen type V alpha 2 chain)
Canis lupus familiaris (dog) : COL5A2 (collagen type V alpha 2 chain)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Col5a2 (collagen type V alpha 2 chain)
Sus scrofa (pig) : COL5A2 (collagen type V alpha 2 chain)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0952,091,088 - 52,238,735 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0951,757,496 - 51,906,270 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4944,374,113 - 44,525,086 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1944,376,901 - 44,388,758 (-)NCBI
Celera945,135,653 - 45,279,153 (-)NCBICelera
Cytogenetic Map9q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated

Genomics

Candidate Gene Status
Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
RGD Curation Notes
 
More on Col5a2
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 70921
Created: 2002-07-09
Species: Rattus norvegicus
Last Modified: 2019-10-16
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.