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Gene: Pdzk1 (PDZ domain containing 1) Rattus norvegicus
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Symbol: Pdzk1
Name: PDZ domain containing 1
Description: Exhibits scavenger receptor binding activity. Predicted to be involved in several processes, including carnitine transport; positive regulation of protein targeting to membrane; and regulation of ion transport. Localizes to the apical plasma membrane; membrane raft; and microvillus membrane. Orthologous to human PDZK1 (PDZ domain containing 1); INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 3H-1,2-dithiole-3-thione.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: C-terminal linking and modulating protein; C-terminal-linking and modulating protein; Clamp; dietary Pi-regulated RNA-1; diphor-1; na(+)/H(+) exchange regulatory cofactor NHE-RF3; na(+)/H(+) exchanger regulatory factor 3; na/Pi cotransporter C-terminal-associated protein 1; naPi-Cap1; NHERF-3; PDZ domain-containing protein 1; sodium-hydrogen exchanger regulatory factor 3
Orthologs:
Homo sapiens (human) : PDZK1 (PDZ domain containing 1)  HGNC  Alliance
Mus musculus (house mouse) : Pdzk1 (PDZ domain containing 1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Pdzk1 (PDZ domain containing 1)
Pan paniscus (bonobo/pygmy chimpanzee) : PDZK1 (PDZ domain containing 1)
Canis lupus familiaris (dog) : PDZK1 (PDZ domain containing 1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Pdzk1 (PDZ domain containing 1)
Sus scrofa (pig) : PDZK1 (PDZ domain containing 1)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
NCBI Annotation Information: Annotation category: suggests misassembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.02198,965,685 - 198,999,323 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2198,965,685 - 198,999,323 (+)Ensembl
Rnor_5.02218,452,670 - 218,484,881 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42191,643,593 - 191,675,995 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.12191,606,346 - 191,638,749 (+)NCBI
Celera2176,900,642 - 176,931,947 (+)NCBICelera
Cytogenetic Map2q34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
RGD Curation Notes
 
More on Pdzk1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 70924
Created: 2002-07-09
Species: Rattus norvegicus
Last Modified: 2019-10-16
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.