Gene: Col18a1 (collagen type XVIII alpha 1 chain) Rattus norvegicus
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Symbol: Col18a1
Name: collagen type XVIII alpha 1 chain
Description: Predicted to have extracellular matrix structural constituent; involved in response to drug and response to hydrostatic pressure; localizes to the extracellular space; used to study hepatocellular carcinoma; biomarker of gastric ulcer; orthologous to human COL18A1 (collagen type XVIII alpha 1 chain); PARTICIPATES IN forkhead class A signaling pathway; INTERACTS WITH 17alpha-ethynylestradiol; 2,2',5,5'-tetrachlorobiphenyl; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: collagen alpha-1(XVIII) chain; collagen type XVIII alpha 1; collagen, type XVIII, alpha 1; procollagen, type XVIII, alpha 1
Orthologs:
Homo sapiens (human) : COL18A1 (collagen type XVIII alpha 1 chain)  HGNC  Alliance
Mus musculus (house mouse) : Col18a1 (collagen, type XVIII, alpha 1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Col18a1 (collagen type XVIII alpha 1 chain)
Pan paniscus (bonobo/pygmy chimpanzee) : COL18A1 (collagen type XVIII alpha 1 chain)
Canis lupus familiaris (dog) : COL18A1 (collagen type XVIII alpha 1 chain)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Col18a1 (collagen type XVIII alpha 1 chain)
Sus scrofa (pig) : COL18A1 (collagen type XVIII alpha 1 chain)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.02012,225,202 - 12,332,858 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.02014,388,743 - 14,495,241 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42011,920,816 - 11,982,468 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.12011,979,239 - 11,981,856 (+)NCBI
Celera2012,974,396 - 13,081,322 (+)NCBICelera
Cytogenetic Map20p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 5.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
RGD Curation Notes
 
More on Col18a1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 70936
Created: 2002-07-09
Species: Rattus norvegicus
Last Modified: 2019-04-23
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.