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Gene: Capn9 (calpain 9) Rattus norvegicus
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Symbol: Capn9
Name: calpain 9
Description: Predicted to have calcium-dependent cysteine-type endopeptidase activity. Predicted to be involved in sarcomere organization. Predicted to localize to the cytoplasm. Human ortholog(s) of this gene implicated in stomach cancer. Orthologous to human CAPN9 (calpain 9); INTERACTS WITH 1-naphthyl isothiocyanate; ammonium chloride; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: calpain 9 (nCL-4); calpain-9; digestive tract-specific calpain; Ncl-4; new calpain 4
Orthologs:
Homo sapiens (human) : CAPN9 (calpain 9)  HGNC  Alliance
Mus musculus (house mouse) : Capn9 (calpain 9)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Capn9 (calpain 9)
Pan paniscus (bonobo/pygmy chimpanzee) : CAPN9 (calpain 9)
Canis lupus familiaris (dog) : CAPN9 (calpain 9)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Capn9 (calpain 9)
Sus scrofa (pig) : CAPN9 (calpain 9)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01957,341,938 - 57,378,901 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1957,341,938 - 57,378,901 (+)Ensembl
Rnor_5.01968,047,157 - 68,084,264 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41954,759,009 - 54,796,390 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11954,763,943 - 54,801,111 (+)NCBI
Celera1951,919,286 - 51,955,889 (+)NCBICelera
Cytogenetic Map19q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
RGD Curation Notes
 
More on Capn9
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 70965
Created: 2002-07-09
Species: Rattus norvegicus
Last Modified: 2019-11-27
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.