Gene: Col3a1 (collagen type III alpha 1 chain) Rattus norvegicus
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Symbol: Col3a1
Name: collagen type III alpha 1 chain
Description: Predicted to have several functions, including SMAD binding activity, extracellular matrix structural constituent, and integrin binding activity; involved in response to mechanical stimulus and skeletal system development; localizes to the collagen-containing extracellular matrix; biomarker of bladder neck obstruction, glomerulosclerosis, myocardial infarction, and type 2 diabetes mellitus; orthologous to human COL3A1 (collagen type III alpha 1 chain); PARTICIPATES IN cell-extracellular matrix signaling pathway; Entamoebiasis pathway; INTERACTS WITH (-)-epigallocatechin 3-gallate; (R)-noradrenaline; (R)-rosmarinic acid.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: collagen alpha-1(III) chain; collagen, type III, alpha 1; MGC93704; procollagen type III alpha 1; procollagen, type III, alpha 1
Orthologs:
Homo sapiens (human) : COL3A1 (collagen type III alpha 1 chain)  HGNC  Alliance
Mus musculus (house mouse) : Col3a1 (collagen, type III, alpha 1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Col3a1 (collagen type III alpha 1 chain)
Pan paniscus (bonobo/pygmy chimpanzee) : COL3A1 (collagen type III alpha 1 chain)
Canis lupus familiaris (dog) : COL3A1 (collagen type III alpha 1 chain)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Col3a1 (collagen type III alpha 1 chain)
Sus scrofa (pig) : COL3A1 (collagen type III alpha 1 chain)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0952,023,295 - 52,059,221 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0951,689,492 - 51,725,418 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4944,281,582 - 44,317,831 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1944,310,161 - 44,319,243 (+)NCBI
Celera945,061,755 - 45,097,754 (+)NCBICelera
Cytogenetic Map9q22NCBI
RH 3.4 Map9388.09RGD
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated

Genomics

Candidate Gene Status
Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 5.0)

Additional Information

External Database Links
Nomenclature History
RGD Curation Notes
 
More on Col3a1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 71029
Created: 2002-07-09
Species: Rattus norvegicus
Last Modified: 2019-04-23
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.