Gene: Lhx5 (LIM homeobox 5) Rattus norvegicus
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Symbol: Lhx5
Name: LIM homeobox 5
Description: Predicted to have DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II regulatory region sequence-specific DNA binding activity; predicted to be involved in animal organ development, cerebellar Purkinje cell-granule cell precursor cell signaling involved in regulation of granule cell precursor cell proliferation, and positive regulation of transcription by RNA polymerase II; predicted to localize to the nucleus; orthologous to human LHX5 (LIM homeobox 5); INTERACTS WITH all-trans-retinoic acid; ammonium chloride; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: homeobox protein LIM-2; LIM homeobox protein 5; LIM/homeobox protein Lhx5
Orthologs:
Homo sapiens (human) : LHX5 (LIM homeobox 5)  HGNC  Alliance
Mus musculus (house mouse) : Lhx5 (LIM homeobox protein 5)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Lhx5 (LIM homeobox 5)
Pan paniscus (bonobo/pygmy chimpanzee) : LHX5 (LIM homeobox 5)
Canis lupus familiaris (dog) : LHX5 (LIM homeobox 5)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Lhx5 (LIM homeobox 5)
Sus scrofa (pig) : LHX5 (LIM homeobox 5)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01241,663,000 - 41,671,437 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01243,513,076 - 43,521,513 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41237,323,820 - 37,332,257 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11237,187,214 - 37,195,645 (-)NCBI
Celera1237,784,186 - 37,792,623 (-)NCBICelera
Cytogenetic Map12q16NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 5.0)

Additional Information

External Database Links
Nomenclature History
RGD Curation Notes
 
More on Lhx5
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 71079
Created: 2002-07-09
Species: Rattus norvegicus
Last Modified: 2019-04-23
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.