Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Gene: Astn1 (astrotactin 1) Rattus norvegicus
Analyze
Symbol: Astn1
Name: astrotactin 1
CRRD ID: 727799
Description: Predicted to be involved in locomotory behavior; neuron cell-cell adhesion; and neuron migration. Predicted to localize to endosome; external side of plasma membrane; and integral component of membrane. Orthologous to human ASTN1 (astrotactin 1); INTERACTS WITH bis(2-ethylhexyl) phthalate; bisphenol A; Butylbenzyl phthalate.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: astrotactin-1; LOC304900; synaptogenesis-related mRNA sequence 1
Orthologs:
Homo sapiens (human) : ASTN1 (astrotactin 1)  HGNC  Alliance
Mus musculus (house mouse) : Astn1 (astrotactin 1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Astn1 (astrotactin 1)
Pan paniscus (bonobo/pygmy chimpanzee) : ASTN1 (astrotactin 1)
Canis lupus familiaris (dog) : ASTN1 (astrotactin 1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Astn1 (astrotactin 1)
Sus scrofa (pig) : ASTN1 (astrotactin 1)
Chlorocebus sabaeus (African green monkey) : ASTN1 (astrotactin 1)
Heterocephalus glaber (naked mole-rat) : Astn1 (astrotactin 1)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01376,054,965 - 76,370,674 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1376,055,410 - 76,370,674 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01380,970,094 - 81,285,187 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41373,650,722 - 73,964,585 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11373,898,509 - 73,946,760 (+)NCBI
Celera1370,353,119 - 70,668,934 (+)NCBICelera
Cytogenetic Map13q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Phenotype Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Astn1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 727799
Created: 2003-11-05
Species: Rattus norvegicus
Last Modified: 2020-08-20
Status: ACTIVE



NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.