Gene: Col23a1 (collagen type XXIII alpha 1 chain) Rattus norvegicus
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Symbol: Col23a1
Name: collagen type XXIII alpha 1 chain
Description: Exhibits heparin binding activity and protein homodimerization activity; involved in protein homotrimerization; localizes to the cell surface and extracellular space; orthologous to human COL23A1 (collagen type XXIII alpha 1 chain); INTERACTS WITH 6-propyl-2-thiouracil; ammonium chloride; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: collagen alpha-1(XXIII) chain; collagen XXIII; collagen, type XXIII, alpha 1; procollagen, type XXIII, alpha 1
Orthologs:
Homo sapiens (human) : COL23A1 (collagen type XXIII alpha 1 chain)  HGNC  Alliance
Mus musculus (house mouse) : Col23a1 (collagen, type XXIII, alpha 1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Col23a1 (collagen type XXIII alpha 1 chain)
Pan paniscus (bonobo/pygmy chimpanzee) : COL23A1 (collagen type XXIII alpha 1 chain)
Canis lupus familiaris (dog) : COL23A1 (collagen type XXIII alpha 1 chain)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Col23a1 (collagen type XXIII alpha 1 chain)
Sus scrofa (pig) : COL23A1 (collagen type XXIII alpha 1 chain)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01034,846,618 - 34,934,991 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01036,512,405 - 36,803,482 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41036,808,661 - 37,096,560 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11036,809,709 - 37,097,609 (+)NCBI
Celera1034,905,532 - 35,193,058 (+)NCBICelera
Cytogenetic Map10q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References - curated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 5.0)

Additional Information

External Database Links
Nomenclature History
RGD Curation Notes
 
More on Col23a1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 727898
Created: 2003-11-05
Species: Rattus norvegicus
Last Modified: 2019-04-12
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.