Gene: Otp (orthopedia homeobox) Rattus norvegicus
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Symbol: Otp
Name: orthopedia homeobox
Description: Predicted to have sequence-specific DNA binding activity; predicted to be involved in nervous system development; predicted to localize to the nucleus; orthologous to human OTP (orthopedia homeobox); INTERACTS WITH ammonium chloride; bisphenol A; (-)-demecolcine (ortholog).
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: homeobox protein orthopedia; orthopedia homolog; orthopedia homolog (Drosophila)
Orthologs:
Homo sapiens (human) : OTP (orthopedia homeobox)  HGNC  Alliance
Mus musculus (house mouse) : Otp (orthopedia homeobox)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Otp (orthopedia homeobox)
Pan paniscus (bonobo/pygmy chimpanzee) : OTP (orthopedia homeobox)
Canis lupus familiaris (dog) : OTP (orthopedia homeobox)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Otp (orthopedia homeobox)
Sus scrofa (pig) : OTP (orthopedia homeobox)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0224,546,393 - 24,554,953 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0243,712,386 - 43,722,342 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4225,176,599 - 25,184,585 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1225,098,409 - 25,098,690 (+)NCBI
Celera222,179,022 - 22,187,133 (+)NCBICelera
Cytogenetic Map2q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 5.0)

Additional Information

External Database Links
Nomenclature History
 
More on Otp
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 727945
Created: 2003-11-05
Species: Rattus norvegicus
Last Modified: 2019-04-23
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.