Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes QTLs Strains Markers Genome Information Ontologies Cell Lines References FTP Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) RatMine GViewer (Genome Viewer) Overgo Probe Designer ACP Haplotyper Genome Scanner
Aging & Age-Related Disease Cancer Cardiovascular Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Genetic Models PhenoMiner (Quantitative Phenotypes) Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: VMP1 (vacuole membrane protein 1) Homo sapiens
Analyze
Symbol: VMP1
Name: vacuole membrane protein 1
Description: Involved in autophagosome assembly; cell junction assembly; and cell-cell adhesion. Localizes to the endoplasmic reticulum and nucleolus.
Type: protein-coding
RefSeq Status: REVIEWED
Also known as: DKFZp566I133; ectopic P-granules autophagy protein 3 homolog; EPG3; TANGO5; TMEM49; transmembrane protein 49; transport and golgi organization 5 homolog
Orthologs:
Mus musculus (house mouse) : Vmp1 (vacuole membrane protein 1)  MGI  Alliance
Rattus norvegicus (Norway rat) : Vmp1 (vacuole membrane protein 1)  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Vmp1 (vacuole membrane protein 1)
Canis lupus familiaris (dog) : VMP1 (vacuole membrane protein 1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Vmp1 (vacuole membrane protein 1)
more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381759,707,654 - 59,842,255 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371757,784,553 - 57,919,610 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361755,139,811 - 55,273,235 (+)NCBINCBI36hg18NCBI36
Build 341755,139,810 - 55,273,235NCBI
Celera1754,248,613 - 54,381,467 (+)NCBI
Cytogenetic Map17q23.1NCBI
HuRef1753,157,402 - 53,290,443 (+)NCBIHuRef
CHM1_11757,849,881 - 57,981,975 (+)NCBICHM1_1
JBrowse: View Region in Genome Browser (JBrowse)
Model

Annotation    (Toggle Annotation Detail/Summary View)

Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
miRNA Target Status

Expression


Sequence

Nucleotide Sequences
Protein Sequences
Promoters
Clinical Variants

Additional Information

External Database Links
Nomenclature History
  
More on VMP1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: hg19 hg38
HGNC Report
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 731420
Created: 2004-01-12
Species: Homo sapiens
Last Modified: 2019-11-26
Status: ACTIVE



Contact Us |  About Us |  License CC BY 4.0 |  Legal Disclaimer |  © Medical College of Wisconsin
NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.