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Gene: SCAF1 (SR-related CTD associated factor 1) Homo sapiens
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Symbol: SCAF1
Name: SR-related CTD associated factor 1
Description: Exhibits RNA polymerase II C-terminal domain binding activity. Predicted to be involved in RNA splicing; mRNA processing; and transcription by RNA polymerase II. Predicted to localize to nucleus; INTERACTS WITH 3-isobutyl-1-methyl-7H-xanthine; arsenous acid; atrazine.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: ctd-binding sr-like ra1; FLJ00034; SCAF; serine arginine-rich pre-mRNA splicing factor SR-A1; splicing factor, arginine/serine-rich 19; SR-related and CTD-associated factor 1; SR-related C-terminal domain-associated factor 1; SR-related CTD-associated factor 1; SR-related-CTD-associated factor; SRA1
Orthologs:
Mus musculus (house mouse) : Scaf1 (SR-related CTD-associated factor 1)  MGI  Alliance
Rattus norvegicus (Norway rat) : Scaf1 (SR-related CTD-associated factor 1)  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Scaf1 (SR-related CTD associated factor 1)
Pan paniscus (bonobo/pygmy chimpanzee) : SCAF1 (SR-related CTD associated factor 1)
Canis lupus familiaris (dog) : SCAF1 (SR-related CTD associated factor 1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Scaf1 (SR-related CTD associated factor 1)
Sus scrofa (pig) : SCAF1 (SR-related CTD associated factor 1)
Chlorocebus sabaeus (African green monkey) : SCAF1 (SR-related CTD associated factor 1)
Heterocephalus glaber (naked mole-rat) : Scaf1 (SR-related CTD associated factor 1)
more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38 Ensembl1949,642,209 - 49,658,642 (+)EnsemblGRCh38hg38GRCh38
GRCh381949,640,481 - 49,658,642 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371950,145,382 - 50,161,906 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361954,832,203 - 54,853,711 (+)NCBINCBI36hg18NCBI36
Build 341954,840,088 - 54,853,710NCBI
Celera1947,014,713 - 47,031,238 (+)NCBI
Cytogenetic Map19q13.33NCBI
HuRef1946,522,442 - 46,538,676 (+)NCBIHuRef
CHM1_11950,147,163 - 50,163,695 (+)NCBICHM1_1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Promoters
Clinical Variants

Additional Information

External Database Links
Nomenclature History
 
More on SCAF1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: hg19 hg38
HGNC Report
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 733391
Created: 2004-01-12
Species: Homo sapiens
Last Modified: 2020-05-05
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.