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Gene: Col5a1 (collagen, type V, alpha 1) Mus musculus
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Symbol: Col5a1
Name: collagen, type V, alpha 1
CRRD ID: 733436
Description: Exhibits extracellular matrix structural constituent. Involved in several processes, including circulatory system development; collagen fibril organization; and tendon development. Localizes to basement membrane and collagen trimer. Is expressed in several structures, including embryo mesenchyme; extraembryonic component; genitourinary system; heart; and skeleton. Used to study Ehlers-Danlos syndrome classic type 1. Human ortholog(s) of this gene implicated in Ehlers-Danlos syndrome and Ehlers-Danlos syndrome classic type 1. Orthologous to human COL5A1 (collagen type V alpha 1 chain); PARTICIPATES IN syndecan signaling pathway; cell-extracellular matrix signaling pathway; Entamoebiasis pathway; INTERACTS WITH 1,2-dimethylhydrazine; 17alpha-ethynylestradiol; 17beta-estradiol.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: AI413331; alpha1(V) collagen; collagen alpha-1(V) chain; expressed sequence AI413331; pro-alpha1(V) collagen; procollagen type V alpha 1; procollagen, type V, alpha 1
Orthologs:
Homo sapiens (human) : COL5A1 (collagen type V alpha 1 chain)  HGNC  Alliance
Rattus norvegicus (Norway rat) : Col5a1 (collagen type V alpha 1 chain)  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Col5a1 (collagen type V alpha 1 chain)
Pan paniscus (bonobo/pygmy chimpanzee) : COL5A1 (collagen type V alpha 1 chain)
Canis lupus familiaris (dog) : COL5A1 (collagen type V alpha 1 chain)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Col5a1 (collagen type V alpha 1 chain)
Sus scrofa (pig) : COL5A1 (collagen type V alpha 1 chain)
Chlorocebus sabaeus (African green monkey) : COL5A1 (collagen type V alpha 1 chain)
Heterocephalus glaber (naked mole-rat) : Col5a1 (collagen type V alpha 1 chain)
more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39227,776,393 - 27,929,522 (+)NCBI
GRCm38227,886,381 - 28,039,510 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl227,886,425 - 28,039,514 (+)EnsemblGRCm38mm10GRCm38
MGSCv37227,741,945 - 27,895,030 (+)NCBIGRCm37mm9NCBIm37
MGSCv36227,708,694 - 27,859,533 (+)NCBImm8
Celera227,589,197 - 27,742,307 (+)NCBICelera
Cytogenetic Map2A3NCBI
cM Map219.38NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
Phenotype Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (GRCm38)
miRNA Target Status

Expression


Sequence

Nucleotide Sequences
Protein Sequences
Promoters

Additional Information

External Database Links
Nomenclature History
 
More on Col5a1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: mm9 mm10
MGI Report
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 733436
Created: 2004-01-12
Species: Mus musculus
Last Modified: 2020-10-13
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.