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Gene: Colec12 (collectin sub-family member 12) Rattus norvegicus
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Symbol: Colec12
Name: collectin sub-family member 12
Description: Predicted to have low-density lipoprotein particle binding activity; signaling pattern recognition receptor activity; and transmembrane signaling receptor activity. Predicted to be involved in several processes, including cellular response to exogenous dsRNA; positive regulation of cell adhesion molecule production; and toll-like receptor 3 signaling pathway. Predicted to localize to the collagen trimer and integral component of membrane. Orthologous to human COLEC12 (collectin subfamily member 12); PARTICIPATES IN phagocytosis pathway; INTERACTS WITH 1-naphthyl isothiocyanate; 17alpha-ethynylestradiol; 17beta-estradiol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: CL-P1; collectin placenta protein 1; collectin-12; MGC114569; nurse cell scavenger receptor 2
Orthologs:
Homo sapiens (human) : COLEC12 (collectin subfamily member 12)  HGNC  Alliance
Mus musculus (house mouse) : Colec12 (collectin sub-family member 12)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Colec12 (collectin subfamily member 12)
Pan paniscus (bonobo/pygmy chimpanzee) : COLEC12 (collectin subfamily member 12)
Canis lupus familiaris (dog) : COLEC12 (collectin subfamily member 12)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Colec12 (collectin subfamily member 12)
Sus scrofa (pig) : COLEC12 (collectin subfamily member 12)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.018867,048 - 1,054,047 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl18867,048 - 1,052,606 (+)Ensembl
Rnor_5.018910,945 - 1,096,505 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.418996,297 - 1,188,288 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1181,162,605 - 1,163,261 (+)NCBI
Celera18629,852 - 811,837 (+)NCBICelera
Cytogenetic Map18p13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Colec12
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 735039
Created: 2004-02-05
Species: Rattus norvegicus
Last Modified: 2019-11-27
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.