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Gene: Pcdhac1 (protocadherin alpha subfamily C, 1) Rattus norvegicus
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Symbol: Pcdhac1
Name: protocadherin alpha subfamily C, 1
Description: Predicted to have calcium ion binding activity. Predicted to be involved in homophilic cell adhesion via plasma membrane adhesion molecules. Predicted to localize to the cytoplasm; extracellular space; and integral component of plasma membrane. Orthologous to human PCDHAC1 (protocadherin alpha subfamily C, 1); INTERACTS WITH ammonium chloride; bisphenol A; 1,2-dichloroethane (ortholog).
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: cadherin-related neuronal receptor c1; protocadherin alpha c1; protocadherin alpha-C1; rCNRvc1
Orthologs:
Homo sapiens (human) : PCDHAC1 (protocadherin alpha subfamily C, 1)  HGNC  Alliance
Mus musculus (house mouse) : Pcdhac1 (protocadherin alpha subfamily C, 1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Pcdhac1 (protocadherin alpha subfamily C, 1)
Pan paniscus (bonobo/pygmy chimpanzee) : PCDHAC1 (protocadherin alpha subfamily C, 1)
Canis lupus familiaris (dog) : PCDHAC1 (protocadherin alpha subfamily C, 1)
Heterocephalus glaber (naked mole-rat) : Pcdhac1 (protocadherin alpha subfamily C, 1)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
NCBI Annotation Information: Genome Annotation Status: not in current annotation release
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01830,114,708 - 30,215,896 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1829,987,206 - 30,215,897 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01829,810,769 - 29,924,443 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41829,826,654 - 29,928,030 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11829,853,299 - 29,954,676 (+)NCBI
Celera1828,453,339 - 28,552,754 (+)NCBICelera
Cytogenetic Map18p11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)

Expression


Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on Pcdhac1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 735086
Created: 2004-02-05
Species: Rattus norvegicus
Last Modified: 2019-11-27
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.