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Gene: Col27a1 (collagen type XXVII alpha 1 chain) Rattus norvegicus
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Symbol: Col27a1
Name: collagen type XXVII alpha 1 chain
Description: Predicted to have extracellular matrix structural constituent. Predicted to be involved in extracellular matrix organization and growth plate cartilage chondrocyte development. Predicted to localize to the extracellular space and fibrillar collagen trimer. Orthologous to human COL27A1 (collagen type XXVII alpha 1 chain); INTERACTS WITH (RS)-amphetamine; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: collagen alpha-1(XXVII) chain; collagen type XXVII proalpha 1 chain; collagen, type XXVII, alpha 1; procollagen, type XXVII, alpha 1
Orthologs:
Homo sapiens (human) : COL27A1 (collagen type XXVII alpha 1 chain)  HGNC  Alliance
Mus musculus (house mouse) : Col27a1 (collagen, type XXVII, alpha 1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Col27a1 (collagen type XXVII alpha 1 chain)
Pan paniscus (bonobo/pygmy chimpanzee) : COL27A1 (collagen type XXVII alpha 1 chain)
Canis lupus familiaris (dog) : COL27A1 (collagen type XXVII alpha 1 chain)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Col27a1 (collagen type XXVII alpha 1 chain)
Sus scrofa (pig) : COL27A1 (collagen type XXVII alpha 1 chain)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0579,054,004 - 79,172,442 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0583,168,893 - 83,286,676 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4580,198,078 - 80,316,354 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1580,203,190 - 80,321,467 (+)NCBI
Celera575,584,269 - 75,698,202 (+)NCBICelera
Cytogenetic Map5q24NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 5.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on Col27a1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 735115
Created: 2004-02-05
Species: Rattus norvegicus
Last Modified: 2019-08-20
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.