Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Gene: Map1lc3a (microtubule-associated protein 1 light chain 3 alpha) Rattus norvegicus
Analyze
Symbol: Map1lc3a
Name: microtubule-associated protein 1 light chain 3 alpha
Description: Predicted to have microtubule binding activity; phosphatidylethanolamine binding activity; and ubiquitin protein ligase binding activity. Involved in several processes, including response to iron(II) ion; response to lead ion; and response to morphine. Localizes to the cytoplasm and synapse. Biomarker of artery disease (multiple); degenerative disc disease; eye disease (multiple); ischemia (multiple); and type 2 diabetes mellitus. Human ortholog(s) of this gene implicated in glioblastoma multiforme. Orthologous to human MAP1LC3A (microtubule associated protein 1 light chain 3 alpha); PARTICIPATES IN autophagy pathway; INTERACTS WITH 1-naphthyl isothiocyanate; 17alpha-ethynylestradiol; 4,4'-diaminodiphenylmethane.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: autophagy-related protein LC3 A; autophagy-related ubiquitin-like modifier LC3 A; LC3-I; LC3-II; LC3A; MAP1 light chain 3-like protein 1; MAP1A/1B light chain 3 A; MAP1A/MAP1B LC3 A; MAP1A/MAP1B light chain 3 A; MGC105263; microtubule-associated proteins 1A/1B light chain 3A
Orthologs:
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.03150,801,289 - 150,802,935 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.03157,169,534 - 157,171,180 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43145,758,939 - 145,760,532 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.13145,664,573 - 145,666,154 (+)NCBI
Celera3142,510,304 - 142,511,947 (+)NCBICelera
Cytogenetic Map3q41NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 5.0)

Additional Information

External Database Links
Nomenclature History
 
More on Map1lc3a
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 735183
Created: 2004-02-05
Species: Rattus norvegicus
Last Modified: 2019-04-23
Status: ACTIVE



NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.