LINC00384 (long intergenic non-protein coding RNA 384) - Chinchilla Research Resource Database

Gene: LINC00384 (long intergenic non-protein coding RNA 384) Homo sapiens

Analyze

Symbol:

LINC00384

Name:

long intergenic non-protein coding RNA 384

Description:

Type:

ncrna

RefSeq Status:

VALIDATED

Allele / Splice:

See ClinVar data

Latest Assembly:

GRCh38 - Human Genome Assembly GRCh38

Position:

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	13	30,151,886 - 30,153,074 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
Cytogenetic Map	13	q12.3	NCBI
HuRef	13	11,539,997 - 11,547,732 (-)	NCBI		HuRef
CHM1_1	13	30,693,598 - 30,701,652 (-)	NCBI		CHM1_1

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation (Toggle Annotation Detail/Summary View)

Genomics

Expression

Sequence

Nucleotide Sequences

Clinical Variants

Name	Type	Condition(s)	Position(s)	Clinical significance
GRCh38/hg38 13q12.3-13.1(chr13:29654134-32858245)x1	copy number loss	Sensorineural hearing loss [RCV000051372]\|See cases [RCV000051372]	Chr13:29654134..32858245 [GRCh38] Chr13:30228271..33432383 [GRCh37] Chr13:29126271..32330383 [NCBI36] Chr13:13q12.3-13.1	pathogenic
GRCh38/hg38 13q11-34(chr13:18565048-114327173)x3	copy number gain	Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053719]\|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053719]\|See cases [RCV000053719]	Chr13:18565048..114327173 [GRCh38] Chr13:19139188..115085141 [GRCh37] Chr13:18037188..114110750 [NCBI36] Chr13:13q11-34	pathogenic
GRCh38/hg38 13q11-13.3(chr13:18676442-37656039)x3	copy number gain	Intellectual functioning disability [RCV000053721]\|See cases [RCV000053721]	Chr13:18676442..37656039 [GRCh38] Chr13:19250582..38230176 [GRCh37] Chr13:18148582..37128176 [NCBI36] Chr13:13q11-13.3	pathogenic
GRCh38/hg38 13q11-34(chr13:18850545-114327173)x3	copy number gain	Premature Birth [RCV000053723]\|See cases [RCV000053723]	Chr13:18850545..114327173 [GRCh38] Chr13:19296527..115085141 [GRCh37] Chr13:18194527..114110750 [NCBI36] Chr13:13q11-34	pathogenic
GRCh38/hg38 13q12.11-34(chr13:18946182-114304628)x3	copy number gain	Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053726]\|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053726]\|See cases [RCV000053726]	Chr13:18946182..114304628 [GRCh38] Chr13:19520322..115070103 [GRCh37] Chr13:18418322..114088205 [NCBI36] Chr13:13q12.11-34	pathogenic
GRCh38/hg38 13q12.11-12.3(chr13:18958091-31090460)x3	copy number gain	Bilateral cleft palate [RCV000053729]\|See cases [RCV000053729]	Chr13:18958091..31090460 [GRCh38] Chr13:19532231..31664597 [GRCh37] Chr13:18430231..30562597 [NCBI36] Chr13:13q12.11-12.3	pathogenic
GRCh38/hg38 13q12.11-34(chr13:19837395-114327173)x3	copy number gain	Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053731]\|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053731]\|See cases [RCV000053731]	Chr13:19837395..114327173 [GRCh38] Chr13:20411535..115085141 [GRCh37] Chr13:19309535..114110750 [NCBI36] Chr13:13q12.11-34	pathogenic
GRCh38/hg38 13q12.11-34(chr13:19833130-114298614)x3	copy number gain	See cases [RCV000134104]	Chr13:19833130..114298614 [GRCh38] Chr13:20407270..115064089 [GRCh37] Chr13:19305270..114082191 [NCBI36] Chr13:13q12.11-34	pathogenic
GRCh38/hg38 13q11-34(chr13:18445862-114327173)x1	copy number loss	See cases [RCV000135610]	Chr13:18445862..114327173 [GRCh38] Chr13:19020001..115085141 [GRCh37] Chr13:10098739..114110750 [NCBI36] Chr13:13q11-34	pathogenic
GRCh38/hg38 13q12.11-14.11(chr13:19671934-40914767)x3	copy number gain	See cases [RCV000137892]	Chr13:19671934..40914767 [GRCh38] Chr13:20246074..41488903 [GRCh37] Chr13:19144074..40386903 [NCBI36] Chr13:13q12.11-14.11	pathogenic
GRCh38/hg38 13q12.3-13.3(chr13:29073320-36556014)x1	copy number loss	See cases [RCV000137923]	Chr13:29073320..36556014 [GRCh38] Chr13:29647457..37130151 [GRCh37] Chr13:28545457..36028151 [NCBI36] Chr13:13q12.3-13.3	pathogenic
GRCh38/hg38 13q12.11-34(chr13:19833130-114327106)x3	copy number gain	See cases [RCV000139078]	Chr13:19833130..114327106 [GRCh38] Chr13:20407270..115085141 [GRCh37] Chr13:19305270..114110683 [NCBI36] Chr13:13q12.11-34	pathogenic
GRCh38/hg38 13q11-34(chr13:18456040-114340285)x3	copy number gain	See cases [RCV000140004]	Chr13:18456040..114340285 [GRCh38] Chr13:19030180..115105760 [GRCh37] Chr13:17928180..114123862 [NCBI36] Chr13:13q11-34	pathogenic
GRCh38/hg38 13q11-13.2(chr13:18862146-33577351)x3	copy number gain	See cases [RCV000141867]	Chr13:18862146..33577351 [GRCh38] Chr13:19436286..34151488 [GRCh37] Chr13:18334286..33049488 [NCBI36] Chr13:13q11-13.2	pathogenic
GRCh38/hg38 13q12.3-13.3(chr13:29321454-36995348)x3	copy number gain	See cases [RCV000142869]	Chr13:29321454..36995348 [GRCh38] Chr13:29895591..37569485 [GRCh37] Chr13:28793591..36467485 [NCBI36] Chr13:13q12.3-13.3	pathogenic
GRCh38/hg38 13q12.11-34(chr13:19671934-114340331)x3	copy number gain	See cases [RCV000142924]	Chr13:19671934..114340331 [GRCh38] Chr13:20246074..115085141 [GRCh37] Chr13:19144074..114123908 [NCBI36] Chr13:13q12.11-34	pathogenic
GRCh38/hg38 13q11-34(chr13:18862146-114342258)x3	copy number gain	See cases [RCV000143462]	Chr13:18862146..114342258 [GRCh38] Chr13:19436286..115107733 [GRCh37] Chr13:18334286..114125835 [NCBI36] Chr13:13q11-34	pathogenic
GRCh38/hg38 13q12.11-34(chr13:19837395-114327173)x3	copy number gain	See cases [RCV000148126]	Chr13:19837395..114327173 [GRCh38] Chr13:20411535..115085141 [GRCh37] Chr13:19309535..114110750 [NCBI36] Chr13:13q12.11-34	pathogenic

Additional Information

External Database Links

More on LINC00384
	Alliance Gene
	NCBI Gene
	Ensembl Gene
	JBrowse: hg38
	HGNC Report
	NCBI Genome Data Viewer

CRRD Object Information
CRRD ID:	7363090
Created:	2013-09-24
Species:	Homo sapiens
Last Modified:	2019-11-26
Status:	ACTIVE

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.

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