Soat2 (sterol O-acyltransferase 2) - Chinchilla Research Resource Database
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Gene: Soat2 (sterol O-acyltransferase 2) Chinchilla lanigera
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Symbol: Soat2
Name: sterol O-acyltransferase 2
CRRD ID: 8701115
Description: ENCODES a protein that exhibits cholesterol binding (ortholog); cholesterol O-acyltransferase activity (ortholog); fatty-acyl-CoA binding (ortholog); INVOLVED IN cholesterol efflux (ortholog); cholesterol esterification (ortholog); cholesterol metabolic process (ortholog); PARTICIPATES IN kidney failure pathway; ASSOCIATED WITH arteriosclerosis (ortholog); celiac disease (ortholog); cholelithiasis (ortholog); FOUND IN brush border (ortholog); endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Orthologs:
Homo sapiens (human) : SOAT2 (sterol O-acyltransferase 2)  HGNC  Alliance
Mus musculus (house mouse) : Soat2 (sterol O-acyltransferase 2)  MGI  Alliance
Rattus norvegicus (Norway rat) : Soat2 (sterol O-acyltransferase 2)  Alliance
Pan paniscus (bonobo/pygmy chimpanzee) : SOAT2 (sterol O-acyltransferase 2)
Canis lupus familiaris (dog) : SOAT2 (sterol O-acyltransferase 2)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Soat2 (sterol O-acyltransferase 2)
Sus scrofa (pig) : SOAT2 (sterol O-acyltransferase 2)
Chlorocebus sabaeus (African green monkey) : SOAT2 (sterol O-acyltransferase 2)
Heterocephalus glaber (naked mole-rat) : Soat2 (sterol O-acyltransferase 2)
more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955458382,892 - 394,749 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955458383,123 - 394,003 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References


Genomics

Comparative Map Data
Soat2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955458382,892 - 394,749 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955458383,123 - 394,003 (+)NCBIChiLan1.0ChiLan1.0
SOAT2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1253,103,486 - 53,124,535 (+)EnsemblGRCh38hg38GRCh38
GRCh381253,103,486 - 53,124,535 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371253,497,274 - 53,518,323 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361251,783,541 - 51,804,590 (+)NCBINCBI36hg18NCBI36
Build 341251,783,581 - 51,804,589NCBI
Celera1253,145,169 - 53,166,217 (+)NCBI
Cytogenetic Map12q13.13NCBI
HuRef1250,540,306 - 50,561,441 (+)NCBIHuRef
CHM1_11253,463,699 - 53,484,782 (+)NCBICHM1_1
Soat2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3915102,058,853 - 102,071,871 (+)NCBI
GRCm3815102,150,415 - 102,163,469 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl15102,150,526 - 102,163,469 (+)EnsemblGRCm38mm10GRCm38
MGSCv3715101,981,006 - 101,993,867 (+)NCBIGRCm37mm9NCBIm37
MGSCv3615101,978,609 - 101,991,470 (+)NCBImm8
Celera15104,305,508 - 104,318,364 (+)NCBICelera
Cytogenetic Map15F2NCBI
cM Map1557.33NCBI
Soat2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.07143,754,892 - 143,767,989 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7143,754,892 - 143,767,989 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07141,552,394 - 141,565,491 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47140,890,902 - 140,903,999 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.17140,967,338 - 140,980,436 (+)NCBI
Celera7129,716,600 - 129,729,697 (+)NCBICelera
Cytogenetic Map7q36NCBI
SOAT2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11236,413,954 - 36,434,074 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1236,413,954 - 36,434,074 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01235,632,018 - 35,653,227 (-)NCBIMhudiblu_PPA_v0panPan3
SOAT2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl272,053,067 - 2,062,329 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1272,053,063 - 2,062,773 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Soat2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_00493651210,420,847 - 10,430,813 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SOAT2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl518,358,673 - 18,371,264 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1518,358,941 - 18,371,262 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2518,773,838 - 18,786,099 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SOAT2
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1 Ensembl1149,215,034 - 49,228,244 (+)Ensembl
ChlSab1.11149,214,295 - 49,228,268 (+)NCBI
Soat2
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046249041,160,275 - 1,170,249 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000020816   ⟹   ENSCLAP00000020618
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_004955458382,892 - 394,749 (+)Ensembl
RefSeq Acc Id: XM_005397145   ⟹   XP_005397202
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955458383,128 - 394,003 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005397147   ⟹   XP_005397204
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955458383,129 - 394,003 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005397148   ⟹   XP_005397205
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955458383,128 - 393,355 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005397150   ⟹   XP_005397207
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955458383,124 - 392,909 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005397151   ⟹   XP_005397208
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955458383,126 - 392,948 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013521027   ⟹   XP_013376481
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955458383,134 - 394,003 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013521028   ⟹   XP_013376482
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955458383,123 - 393,355 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_005397207   ⟸   XM_005397150
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_005397208   ⟸   XM_005397151
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_005397205   ⟸   XM_005397148
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_005397202   ⟸   XM_005397145
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_005397204   ⟸   XM_005397147
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_013376482   ⟸   XM_013521028
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_013376481   ⟸   XM_013521027
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSCLAP00000020618   ⟸   ENSCLAT00000020816


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000014123 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000020618 ENTREZGENE
Ensembl Transcript ENSCLAT00000020816 ENTREZGENE
NCBI Gene Soat2 ENTREZGENE