Galk1 (galactokinase 1) - Chinchilla Research Resource Database
Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Gene: Galk1 (galactokinase 1) Chinchilla lanigera
Analyze
Symbol: Galk1
Name: galactokinase 1
CRRD ID: 8721834
Description: ENCODES a protein that exhibits ATP binding (ortholog); galactokinase activity (ortholog); galactose binding (ortholog); INVOLVED IN carbohydrate phosphorylation (ortholog); galactitol metabolic process (ortholog); galactose metabolic process (ortholog); PARTICIPATES IN galactokinase deficiency pathway; galactose metabolic pathway; galactosemia pathway; ASSOCIATED WITH cataract (ortholog); COVID-19 (ortholog); galactokinase deficiency (ortholog); FOUND IN cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: galactokinase
Orthologs:
Homo sapiens (human) : GALK1 (galactokinase 1)  HGNC  Alliance
Mus musculus (house mouse) : Galk1 (galactokinase 1)  MGI  Alliance
Rattus norvegicus (Norway rat) : Galk1 (galactokinase 1)  Alliance
Pan paniscus (bonobo/pygmy chimpanzee) : GALK1 (galactokinase 1)
Canis lupus familiaris (dog) : GALK1 (galactokinase 1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Galk1 (galactokinase 1)
Sus scrofa (pig) : GALK1 (galactokinase 1)
Chlorocebus sabaeus (African green monkey) : GALK1 (galactokinase 1)
Heterocephalus glaber (naked mole-rat) : Galk1 (galactokinase 1)
more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555066,489,800 - 6,493,354 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555066,489,799 - 6,493,354 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (ISO)
membrane  (ISO)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References


Genomics

Comparative Map Data
Galk1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555066,489,800 - 6,493,354 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555066,489,799 - 6,493,354 (+)NCBIChiLan1.0ChiLan1.0
GALK1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1775,751,594 - 75,765,236 (-)EnsemblGRCh38hg38GRCh38
GRCh381775,751,469 - 75,765,192 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371773,754,018 - 73,761,280 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361771,265,613 - 71,272,875 (-)NCBINCBI36hg18NCBI36
Build 341771,265,612 - 71,272,875NCBI
Celera1770,344,064 - 70,351,327 (-)NCBI
Cytogenetic Map17q25.1NCBI
HuRef1769,178,882 - 69,186,794 (-)NCBIHuRef
CHM1_11773,819,092 - 73,826,355 (-)NCBICHM1_1
Galk1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911115,899,183 - 115,903,545 (-)NCBI
GRCm3811116,008,357 - 116,012,719 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11116,008,457 - 116,012,719 (-)EnsemblGRCm38mm10GRCm38
MGSCv3711115,869,671 - 115,874,033 (-)NCBIGRCm37mm9NCBIm37
MGSCv3611115,824,616 - 115,828,768 (-)NCBImm8
Celera11127,770,557 - 127,774,921 (-)NCBICelera
Cytogenetic Map11E2NCBI
cM Map1180.91NCBI
Galk1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.010104,560,322 - 104,564,499 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10104,560,303 - 104,564,480 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.010103,720,860 - 103,725,037 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.410106,116,774 - 106,120,951 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.110106,131,278 - 106,135,455 (-)NCBI
Celera1099,817,279 - 99,821,456 (-)NCBICelera
Cytogenetic Map10q32.1NCBI
GALK1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11775,259,522 - 75,266,578 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1775,259,522 - 75,269,048 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01769,708,641 - 69,715,942 (-)NCBIMhudiblu_PPA_v0panPan3
GALK1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl94,805,650 - 4,833,503 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.194,818,558 - 4,824,845 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Galk1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_004936594944,936 - 950,537 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GALK1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl125,642,007 - 5,651,183 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1125,642,012 - 5,651,186 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2125,588,391 - 5,597,565 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GALK1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1 Ensembl1645,919,402 - 45,926,304 (+)Ensembl
ChlSab1.11645,919,316 - 45,926,423 (+)NCBI
Galk1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248015,646,112 - 5,649,822 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000010175   ⟹   ENSCLAP00000010045
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555066,489,800 - 6,493,354 (+)Ensembl
RefSeq Acc Id: XM_005407482   ⟹   XP_005407539
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555066,489,800 - 6,493,354 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013505976   ⟹   XP_013361430
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555066,489,799 - 6,493,354 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005407539 (Get FASTA)   NCBI Sequence Viewer  
  XP_013361430 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005407539   ⟸   XM_005407482
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_013361430   ⟸   XM_013505976
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSCLAP00000010045   ⟸   ENSCLAT00000010175


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000006961 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000010045 ENTREZGENE
Ensembl Transcript ENSCLAT00000010175 ENTREZGENE
NCBI Gene Galk1 ENTREZGENE