RH132451 Marker Search Result - Rat Genome Database
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Marker: RH132451

Symbol: RH132451
Also known as: AI454312; 
CRRD ID: 5026500
Expected Size: 191 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.0429,564,522 - 29,564,713NCBIRnor6.0
Rnor_6.0431,568,893 - 31,569,084NCBIRnor6.0
Rnor_5.0431,439,921 - 31,440,112UniSTSRnor5.0
Rnor_5.0429,477,846 - 29,478,037UniSTSRnor5.0
RGSC_v3.4429,428,313 - 29,428,504UniSTSRGSC3.4
Celera427,982,399 - 27,982,590UniSTS
Cytogenetic Map4q13UniSTS
RH 3.4 Map4435.74UniSTS
Is Marker For: Genes:   Col1a2   LOC100911218  


Annotation


References - curated
1. RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer TTGACAATGTCCACAACAGGTG
Reverse Primer GAAAGCTGAATCCTTCCGTGTT
 

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
2512Dync1i1dynein cytoplasmic 1 intermediate chain 143080775531121097Rat
69061Pdk4pyruvate dehydrogenase kinase 443054677230556774Rat
620062Pon1paraoxonase 143024974930276297Rat
621351Col1a2collagen type I alpha 2 chain43153422531569152Rat
1302965Pon3paraoxonase 343031198130338679Rat
632280Ppp1r9aprotein phosphatase 1, regulatory subunit 9A42997648530247371Rat
1303201Sgcesarcoglycan, epsilon42972614029769902Rat
1309954Pon2paraoxonase 243034470530380119Rat
1565889Slc25a13solute carrier family 25 member 1343113416531757006Rat
1559912RGD1559912similar to cytoskeleton associated protein 242991295729914969Rat
1563114Asb4ankyrin repeat and SOCS box-containing 443046167330501340Rat
1562531Samd9lsterile alpha motif domain containing 9-like43129515631299424Rat
1591728LOC680472similar to Villin-143053023930534871Rat
1588444LOC500013similar to sterile alpha motif domain containing 9-like43123431431235711Rat
1595574Peg10paternally expressed 1042979552429804517Rat
1596912Casd1CAS1 domain containing 142963828029693151Rat
6489220LOC100911994coiled-coil domain-containing protein 132-like43133275931352476Rat
6489513LOC100912034guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-11-like43138726231392791Rat
7612072LOC102553883sterile alpha motif domain-containing protein 9-like43122754931229923Rat
7653676LOC102552373uncharacterized LOC10255237343027723630292457Rat
7572472LOC102552043uncharacterized LOC10255204342962315929624594Rat
7584396LOC102552448uncharacterized LOC10255244843053519430544218Rat
7747029LOC102553788uncharacterized LOC10255378843127631131295078Rat
9213284LOC103692066sterile alpha motif domain-containing protein 9-like43122764231235711Rat
9175414LOC103692051uncharacterized LOC10369205142964918129654796Rat
9367140LOC103689919coiled-coil-helix-coiled-coil-helix domain-containing protein 2, mitochondrial pseudogene43148215331482644Rat
9452897NEWGENE_621351collagen, type I, alpha 242952950429565272Rat
11435887LOC10835085260S ribosomal protein L29 pseudogene43061902030619526Rat
11427066LOC108350670uncharacterized LOC10835067042965291429657146Rat



QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
CRRD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357343Gluco4Glucose level QTL 40.00002adipocyte glucose uptake trait (VT:0004185)adipocyte maximal glucose uptake to basal glucose uptake ratio (CMO:0000874)4129778604Rat
1357341Gluco5Glucose level QTL 56.4adipocyte free fatty acid secretion trait (VT:0010465)absolute change in adipocyte free fatty acid secretion per unit volume (CMO:0001446)4129778604Rat
738021Hcar13Hepatocarcinoma resistance QTL 134.3liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)4131554484Rat
634323Hc2Hypercalciuria QTL 22.15urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)4142118977Rat
619616Bp79Blood pressure QTL 790.0292arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)4304323179575658Rat
2303168Bp330Blood pressure QTL 3304.250.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)43043231145254791Rat
2302371Stl22Serum triglyceride level QTL 225.15blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4304401755791834Rat
1358203Stl19Serum triglyceride level QTL 192.80.002blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4304401764915903Rat
631642Stl2Serum triglyceride level QTL 23.3blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4304780755324857Rat
631209Bw2Body weight QTL24.2retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)4646769343414792Rat
1300141Bp178Blood pressure QTL 178arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)4657293937703537Rat
631261Tcas3Tongue tumor susceptibility QTL 36.88tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)4734240492484039Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)47850904182171018Rat
9590304Scort17Serum corticosterone level QTL 174.960.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)4805218953052189Rat
6478724Anxrr35Anxiety related response QTL 350.00449defecation behavior trait (VT:0010462)defecation measurement (CMO:0000997)4805218953052189Rat
6478766Anxrr47Anxiety related response QTL 470.09637locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)4805218953052189Rat
6478769Anxrr48Anxiety related response QTL 480.02514locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4805218953052189Rat
8552906Pigfal3Plasma insulin-like growth factor 1 level QTL 3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)4805218953052189Rat
8694374Bw155Body weight QTL 1553.390.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)4805218953052189Rat
2303585Bw86Body weight QTL 864body mass (VT:0001259)body weight (CMO:0000012)41263897457638974Rat
7387227Uae40Urinary albumin excretion QTL 402.90.0052urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)41614994161149941Rat
70222Eae2Experimental allergic encephalomyelitis QTL 24.3nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)41822218737685319Rat
1354665Stl10Serum triglyceride level QTL 103.57blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)41822218743414792Rat
61412Pia2Pristane induced arthritis QTL 23.9joint integrity trait (VT:0010548)post-insult time to onset of experimental arthritis (CMO:0001450)41822218761039065Rat
8552803Bw144Body weight QTL 14416body mass (VT:0001259)change in body weight to body weight ratio (CMO:0002216)41961886631825560Rat
10755501Bp390Blood pressure QTL 3902.5arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)423850384169318094Rat
6909122Insul22Insulin level QTL 224.63blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)42399172176238799Rat
6909128Pancm4Pancreatic morphology QTL 411.35pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)42399172176238799Rat
1578655Bmd11Bone mineral density QTL 1111femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)42463187469631874Rat
8655906Rf60Renal function QTL 603.8blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)42665474981874227Rat
12798520Anxrr55Anxiety related response QTL 554.450.01locomotor behavior trait (VT:0001392)number of rearing movements with lid-pushing in an experimental apparatus (CMO:0002715)429549895112807890Rat
11530004Niddm71Non-insulin dependent diabetes mellitus QTL 710.001blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)43155448451311866Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene 100911218 UniSTS
  84352 UniSTS
UniGene Rn.107239 UniSTS
  Rn.217793 UniSTS
UniSTS 215734 UniSTS