Bmd76 QTL Report (Rattus norvegicus) - Rat Genome Database
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QTL: Bmd76 (Bone mineral density QTL 76) Rattus norvegicus

Symbol: Bmd76
Name: Bone mineral density QTL 76
CRRD ID: 2313101
Also known as: Pqctf5
Trait: tibia mineral mass   (VT:1000283)    
Measurement Type: total volumetric bone mineral density   (CMO:0001728)    
LOD Score: 3.6
P Value: 1.0E-4
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.0328,136,728 - 51,687,917RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0333,340,297 - 58,322,647RGDRnor5.0
RGSC_v3.4323,762,471 - 47,588,420RGDRGSC3.4
Cross Type: intercross
Strains Crossed: GK/KyoSwe F344/DuCrlSwe 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View
osteoporosis  (IAGP)

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Vertebrate Trait

Rat Strain
F344/DuCrlSwe  (IEA)
GK/KyoSwe  (IEA)

References

References - curated
1. Lagerholm S, etal., J Bone Miner Res. 2009 Jun;24(6):1066-74.
Related QTLs

Related QTL Description Reference
Bss73 maps to same region RGD:2312767
Bmd77 maps to same region RGD:2312767
Bss74 maps to same region RGD:2312767
Bss72 maps to same region RGD:2312767


Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
2515Dpp4dipeptidylpeptidase 434829105548372672Rat
3632Scn2asodium voltage-gated channel alpha subunit 235168791051822008Rat
3635Scn3asodium voltage-gated channel alpha subunit 335153089751643140Rat
3202Nr4a2nuclear receptor subfamily 4, group A, member 234311125843128391Rat
61869Grb14growth factor receptor bound protein 1435093740351054447Rat
71061Kynukynureninase32841692628566939Rat
621112Kcnh7potassium voltage-gated channel subfamily H member 734866245049168716Rat
631407Slc4a10solute carrier family 4 member 1034799581248287897Rat
2958Kcnj3potassium inwardly-rectifying channel, subfamily J, member 334101989841181070Rat
621359Tnfaip6TNF alpha induced protein 633754523837564704Rat
620361Galnt5polypeptide N-acetylgalactosaminyltransferase 534402596444072073Rat
621253Fapfibroblast activation protein, alpha34846778148536242Rat
628859TankTRAF family member-associated NFKB activator34743900747515706Rat
68385Cacnb4calcium voltage-gated channel auxiliary subunit beta 433795084638211478Rat
1303272Mmadhcmetabolism of cobalamin associated D33578351135801474Rat
2668Gcgglucagon34844263548451650Rat
621327Arl5aADP-ribosylation factor like GTPase 5A33792254437947434Rat
1302949Tanc1tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 134568377345917687Rat
621789Acvr1cactivin A receptor type 1C34427285944342501Rat
735212Orc4origin recognition complex, subunit 433303491333075833Rat
70911Acvr2aactivin A receptor type 2A33294790133034598Rat
620200Acvr1activin A receptor type 134443247644539680Rat
1307606Cd302CD302 molecule34632738246361092Rat
735044Galnt13polypeptide N-acetylgalactosaminyltransferase 1333996705640625144Rat
1308539Kif5ckinesin family member 5C33501415735257417Rat
1307777Rbms1RNA binding motif, single stranded interacting protein 134680287047025178Rat
1306589Gcagrancalcin34862596548661317Rat
1303119Itgb6integrin subunit beta 634665262446775362Rat
1306005Slc38a11solute carrier family 38, member 1135137038851416873Rat
1311497Stam2signal transducing adaptor molecule 233823067638277433Rat
1307271Epc2enhancer of polycomb homolog 233364161633741219Rat
1307272Zeb2zinc finger E-box binding homeobox 232985728929985932Rat
1309801Baz2bbromodomain adjacent to zinc finger domain, 2B34596884546286915Rat
1311721NmiN-myc (and STAT) interactor33745889137480984Rat
1309777Pla2r1phospholipase A2 receptor 134648896346621873Rat
1303202Ns5atp4NS5A (hepatitis C virus) transactivated protein 433554215235542907Rat
1359393Tas2r134taste receptor, type 2, member 13433714695537147944Rat
1308367Ermnermin34408035044086006Rat
1308993Marchf7membrane associated ring-CH-type finger 734628496146325230Rat
1308174Fignfidgetin, microtubule severing factor34999225050120601Rat
1309610Dapl1death associated protein-like 134553840845559281Rat
1308188Upp2uridine phosphorylase 234480610644846464Rat
1307990Cytipcytohesin 1 interacting protein34415049444225723Rat
1307840Pkp4plakophilin 434521109745414524Rat
1306676Rbm43RNA binding motif protein 4333743461637446777Rat
1311401Prpf40apre-mRNA processing factor 40 homolog A33868058338741570Rat
1308954Cobll1cordon-bleu WH2 repeat protein-like 135113710451298956Rat
1560496Ifih1interferon induced with helicase C domain 134855769648604097Rat
1563393Gtdc1glycosyltransferase-like domain containing 132941042629705981Rat
1563584RGD1563584similar to myosin, light polypeptide 6, alkali, smooth muscle and non-muscle33787563137876277Rat
1562961Mbd5methyl-CpG binding domain protein 533336481233504144Rat
1565084LOC499796LRRGT0001233617300236220655Rat
1562767Lypd6bLY6/PLAUR domain containing 6B33527178535437296Rat
1561169Ccdc148coiled-coil domain containing 14834489221245210897Rat
1311134Nebnebulin33765808137855843Rat
1564306RGD1564306similar to developmental pluripotency associated 533836748138368110Rat
1359304Arhgap15Rho GTPase activating protein 1532862698729236225Rat
1334145Olr435-psolfactory receptor pseudogene 43533181970231820149Rat
1564819Arl6ip6ADP ribosylation factor like GTPase 6 interacting protein 633874207238768010Rat
1560248Fmnl2formin-like 233840040938677637Rat
1566198RGD1566198similar to 60S ribosomal protein L934781060447811211Rat
1359296Wdsub1WD repeat, sterile alpha motif and U-box domain containing 134592497945955455Rat
1562474Rif1replication timing regulatory factor 133759954037648818Rat
2726Gpd2glycerol-3-phosphate dehydrogenase 234322389243359069Rat
1565962Ly75lymphocyte antigen 7534636974946457182Rat
1592097LOC295611similar to Heterogeneous nuclear ribonucleoprotein A1 (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) (HDP)33907486339082278Rat
1590993LOC690840similar to ribosomal protein L3733180295631803353Rat
1589693Gapdh-ps1glyceraldehyde-3-phosphate dehydrogenase, pseudogene 134473664744738545Rat
1589738Max-ps1Max protein, pseudogene 133225349132253944Rat
1587102LOC679581hypothetical protein LOC67958133574808935749119Rat
1587119Lypd6LY6/PLAUR domain containing 633556695635707416Rat
1588377LOC502627similar to L-lactate dehydrogenase A chain (LDH-A) (LDH muscle subunit) (LDH-M)33750270337503907Rat
1359690Rnd3Rho family GTPase 333664337436660727Rat
1589694LOC366056similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)34337032443437593Rat
1594532Psmd14proteasome 26S subunit, non-ATPase 1434757844947673330Rat
1594533LOC311067similar to proteasome 26S non-ATPase subunit 834706106547063914Rat
1591773Tbr1T-box brain transcription factor 134767772047685902Rat
1593416LOC690655similar to High mobility group protein 1 (HMG-1) (High mobility group protein B1) (Amphoterin) (Heparin-binding protein p30)32830710128348346Rat
1595512Rprmreprimo, TP53 dependent G2 arrest mediator homolog33959530139596718Rat
1598165LOC679905similar to heat shock protein 1, beta34060081040603163Rat
1598030LOC681242hypothetical protein LOC68124235063487250635462Rat
1595484LOC680140similar to H/ACA ribonucleoprotein complex subunit 4 (Dyskerin) (Nucleolar protein family A member 4) (snoRNP protein DKC1) (Nopp140-associated protein of 57 kDa) (Nucleolar protein NAP57)33975471039814605Rat
2321599LOC100364159hypothetical LOC10036415934461194844612764Rat
2323086LOC100359959DEAD (Asp-Glu-Ala-Asp) box polypeptide 1833088282530884942Rat
2322483LOC100360268hypothetical LOC10036026833475157534806463Rat
2320490LOC100361273hypothetical LOC10036127333894461038944975Rat
2324286LOC100362672oral-facial-digital syndrome 1 gene homolog34249282942568523Rat
4109660Cct8-ps2chaperonin containing Tcp1, subunit 8 (theta), pseudogene 233745034637451343Rat
2324571LOC100361645LRRGT00075-like34618536046234331Rat
6489573LOC10091204360S ribosomal protein L38-like34468331544684131Rat
6492288LOC100911508uncharacterized LOC10091150835112062551128868Rat
6486351LOC100912577uncharacterized LOC10091257732998975730001771Rat
6487629LOC100912299zinc finger protein 532-like34398987443991736Rat
7498952LOC102548671uncharacterized LOC10254867133008636130134543Rat
7489036Mir6216microRNA 621634636190846361985Rat
7524143LOC102553383uncharacterized LOC10255338335149051651580995Rat
7530968LOC102548992leucine-rich repeat protein SHOC-2-like34863063348632332Rat
7531097LOC102555518uncharacterized LOC10255551833600367136035746Rat
7515768LOC102552719glyceraldehyde-3-phosphate dehydrogenase-like34185192441852866Rat
7502848LOC102556679uncharacterized LOC10255667933520813235208726Rat
7647415LOC102549732uncharacterized LOC10254973234909540249103640Rat
7650019LOC102548299uncharacterized LOC10254829933000725630015210Rat
7622113LOC102548934uncharacterized LOC10254893433394671833950728Rat
7624465LOC102552656uncharacterized LOC10255265634162707041642723Rat
7657255LOC102555597uncharacterized LOC10255559733625209936259804Rat
7610045LOC102553743secretory phospholipase A2 receptor-like34709333147193994Rat
7571468LOC102552919glyceraldehyde-3-phosphate dehydrogenase-like34238098342381940Rat
7571515LOC102552585uncharacterized LOC10255258535101320051018264Rat
7596037LOC102549384collagen alpha-2(I) chain-like34562041345718683Rat
7543139LOC102555146fatty acid-binding protein, epidermal-like33565474835661404Rat
7597606LOC102553346R3H domain-containing protein 2-like33233802032418971Rat
7556463LOC102556209uncharacterized LOC10255620934489684844935032Rat
7549032LOC102553549glyceraldehyde-3-phosphate dehydrogenase-like33294247732944452Rat
7602324LOC102551550uncharacterized LOC10255155034677900046781523Rat
7607362LOC102548208uncharacterized LOC10254820833001867130035339Rat
7554908LOC102555913uncharacterized LOC10255591334455229644554904Rat
7691310LOC102555425uncharacterized LOC10255542533580141535813832Rat
7736837LOC102546943uncharacterized LOC10254694334558178345589738Rat
7739841LOC102555754uncharacterized LOC10255575434419325644194729Rat
7715701LOC102551367uncharacterized LOC10255136733933599039337677Rat
7716591LOC102551618ADP-ribosylation factor 4-like34623172646234419Rat
7671946LOC102556145uncharacterized LOC10255614534478808344792230Rat
7702504LOC102547849uncharacterized LOC10254784932844449628452127Rat
7703120LOC102548738uncharacterized LOC10254873833017721230233682Rat
7728057LOC10255523860S ribosomal protein L23a-like33563346435634794Rat
9139957LOC103691810uncharacterized LOC10369181034420346444214790Rat
9071802LOC103690137tetratricopeptide repeat protein 21B-like35065626650660105Rat
9156670LOC10369178860S ribosomal protein L28 pseudogene33740797137409527Rat
9190663LOC103691811dynein light chain roadblock-type 1 pseudogene34546309845463719Rat
9112027LOC103691831cation-dependent mannose-6-phosphate receptor pseudogene34759303947615813Rat
9203772LOC103691785uncharacterized LOC10369178533422714034275425Rat
9075793LOC103690391uncharacterized LOC10369039133023868730240433Rat
9126085LOC103691778uncharacterized LOC10369177832964907629650629Rat
9273023Zeb2-as1ZEB2 antisense RNA 132999475329997626Rat
9275128LOC103691793uncharacterized LOC10369179334197443641980662Rat
9318600LOC103691780uncharacterized LOC10369178033028324630292676Rat
9319273LOC10369179228S ribosomal protein S21, mitochondrial pseudogene34052789740528735Rat
9234849LOC103691784uncharacterized LOC10369178433324237633301177Rat
9328336LOC103691782uncharacterized LOC10369178233057348930576317Rat
9265290LOC103691783transcription elongation factor B polypeptide 2 pseudogene33092977030930137Rat
9307219LOC103691812formin-like protein 1434628563446291171Rat
9363799LOC103691814uncharacterized LOC10369181434842202448425442Rat
9422175LOC103691781uncharacterized LOC10369178133048719030499095Rat
9422184LOC103691786centrosomal protein of 19 kDa pseudogene33597016335973068Rat
9422185LOC10369179140S ribosomal protein S2 pseudogene34014861040150053Rat
9427716LOC103691790uncharacterized LOC10369179033875004338766872Rat
9428172Rps27a-ps7ribosomal protein S27a, pseudogene 733885358238854136Rat
9467055LOC10369180760S ribosomal protein L7a pseudogene33249338632495895Rat
9472636LOC103691808uncharacterized LOC10369180833820866738212349Rat
9473665LOC103691789ubiquitin-40S ribosomal protein S27a pseudogene33808367438085844Rat
9403093LOC103691813acanthoscurrin-1-like34454871444552115Rat
9449896LOC103691787uncharacterized LOC10369178733619551036206336Rat
9459692LOC1036918335E5 antigen-like35012022150121450Rat
9854659LOC105650978peptidylprolyl isomerase A (cyclophilin A) pseudogene33886483338865553Rat
11469017LOC108350385uncharacterized LOC10835038534995449749980586Rat
11471288Trnaa-cgc1transfer RNA alanine (anticodon CGC) 134318321043183281Rat
11472940LOC108350373uncharacterized LOC10835037333935740639372197Rat
11444381Trnav-aac2transfer RNA valine (anticodon AAC) 233563937235639444Rat
11446749LOC108350379uncharacterized LOC10835037934674190646752948Rat
11446758LOC108350380uncharacterized LOC10835038034740760847411687Rat
11429489LOC108350370uncharacterized LOC10835037033089101330894479Rat
11452057LOC108350381uncharacterized LOC10835038134732273547403653Rat
11373432LOC108350369uncharacterized LOC10835036933029755630331391Rat
11453362LOC108350371uncharacterized LOC10835037133090168530927400Rat
11432617LOC108350383uncharacterized LOC10835038334916904249172595Rat
11383529LOC108350384uncharacterized LOC10835038434982455649834552Rat
11383937LOC108350593uncharacterized LOC10835059333104192831049523Rat
11422397LOC108350580uncharacterized LOC10835058034595539345963979Rat
11426150LOC108350375uncharacterized LOC10835037534316261043182901Rat
11376859LOC108350581uncharacterized LOC10835058134645724446510364Rat
11377829Trnag-gcc1transfer RNA glycine (anticodon GCC) 134318352743183597Rat
11392125LOC108350552uncharacterized LOC10835055232818763228198156Rat
11502263LOC108350374uncharacterized LOC10835037434098301241019952Rat
11477526LOC108350377uncharacterized LOC10835037734548453345488540Rat
11504551LOC108350376uncharacterized LOC10835037634386870643871300Rat
11504562LOC108350378uncharacterized LOC10835037834552621445554205Rat
11479749LOC108350553uncharacterized LOC10835055333362948733641445Rat
11505523LOC108350594uncharacterized LOC10835059433360880533612862Rat
11506214LOC108350368uncharacterized LOC10835036832940283629411320Rat
11507559LOC108350372uncharacterized LOC10835037233268087032735426Rat
11509719LOC108350382uncharacterized LOC10835038234731200047319863Rat
11496881LOC10835054340S ribosomal protein S11-like35128897151290659Rat
11498418LOC108350367uncharacterized LOC10835036732952159429526603Rat
11513973LOC108350554uncharacterized LOC10835055434295415742957193Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
10625D3Mgh2013034844225348442376Ratregion
10678D3Mgh2118234329593043296111Ratregion
11260D3Mit830935168771151687917Ratregion
33862D3Mit924733439412134394365Ratregion
34336D3Mgh714134052359340523735Ratregion
36047D3Rat4614733789156437891710Ratregion
37282D3Rat10317234699547146995642Ratregion
37282D3Rat10317234699547146995507Ratregion
37394D3Rat12322034641015146410377Ratregion
37510D3Rat10022133924839139248617Ratregion
37588D3Rat18917733977324739773425Ratregion
37010D3Rat4916032813672828136884Ratregion
37166D3Rat11012134715516747155284Ratregion
36472D3Rat4413134577286045772990Ratregion
34927D3Rat19017533209900332099181Ratregion
35745D3Rat4813033011491230115031Ratregion
35947D3Rat4517434151016941510346Ratregion
38148D3Rat8217233297275732972944Ratregion
38346D3Rat9819933347735433477544Ratregion
38552D3Rat8022733659993336600143Ratregion
38646D3Rat11720332966092829661120Ratregion
38652D3Rat11820033856056138560760Ratregion
40122D3Rat18614934522824045228392Ratregion
40218D3Rat18812534192573241925863Ratregion
40362D3Rat18716234577822345778384Ratregion
38818D3Rat8311034699637846996487Ratregion
38882D3Rat8914733689149736891643Ratregion
38904D3Rat12221834379300743793202Ratregion
39034D3Rat11314534857155948571699Ratregion
39050D3Rat13024934856192848562146Ratregion
39494D3Rat18420534859915048599364Ratregion
42643D3Rat27420034604088746041089Ratregion
42644D3Rat27314934792043047920576Ratregion
41780D3Rat22714734540605845406204Ratregion
41842D3Rat22824933960588739606122Ratregion
41908D3Rat27522434566821945668433Ratregion
43627D3Got2320733691912936919335Ratregion
43628D3Got2512933603960136039729Ratregion
43629D3Got2727433647208036472353Ratregion
43630D3Got2421033637695136377160Ratregion
43631D3Got3014833941644639416889Ratregion
43631D3Got3014833941644639416593Ratregion
43632D3Got3122533895140338951627Ratregion
43634D3Got3318534911527049115474Ratregion
60800D3Wox215235053310050533259Ratregion
60801D3Wox310033084610130846204Ratregion
60386D3Got1829132858190928582199Ratregion
60389D3Got2112732839516428395290Ratregion
60390D3Got2213533517656035176695Ratregion
60391D3Got2615133332582633325976Ratregion
60392D3Got2819533273093832731132Ratregion
60393D3Got2920933676000836760216Ratregion
625833D3Got17616333959502439595186Ratregion
727995D3Chm6125033088069430880943Ratregion
727998D3Chm1122732985211229852338Ratregion
727999D3Chm1021434750033047500543Ratregion
728001D3Chm5829632924004829240343Ratregion
728002D3Chm7621533141308931413303Ratregion
728002D3Chm7621533140726031407474Ratregion
728003D3Chm5521534650602446506234Ratregion
728004D3Chm1215134760059247600742Ratregion
728013D3Chm2519233425749134257682Ratregion
728014D3Chm5120834312215243122359Ratregion
728019D3Chm823033135385331354082Ratregion
728022D3Chm2221134950264049502850Ratregion
728024D3Chm5722332908440429084626Ratregion
728029D3Chm7222034329589243296111Ratregion
728032D3Chm7924034541576845416001Ratregion
728033D3Chm5423534659780746598041Ratregion
728035D3Chm4924033066370330663942Ratregion
728036D3Chm6020633110358931103794Ratregion
728037D3Chm5024834304317843043425Ratregion
66569D18Mco120534528441345284579Ratregion
67342D3Arb1710134500940845009508Ratregion
1630651D3Wox3835093753750937644Ratregion
1631692D3Got27425632980347429803729Ratregion
1631732D3Wox3014134311212243112262Ratregion
1639273D3Got20717334860658248606752Ratregion
1641001D3Got30829334475591044756197Ratregion
1641079D3Got30915334686014646860295Ratregion
1641120D3Got20517133331796733318122Ratregion
1633093D3Got25914632943720529437347Ratregion
1633400D3Got20615833527005435270211Ratregion
1639834D3Got30717134869789748698075Ratregion
1640570D3Got29619133037452330374713Ratregion
1635483D3Got24519334481385444814046Ratregion
1638291D3Got26715134579732345797473Ratregion
1638355D3Got2049033357591033575999Ratregion
1633847D3Got24412634612063546120760Ratregion
1633953D3Got27616534672885446729018Ratregion
1634541D3Got25613834327369343273830Ratregion
7192480Gcg16234844663348446794Ratregion
7192159Gcg20134844241148442611Ratregion
5036312Gcg12634844492948445054Ratregion
5036615AU04860422334759867647598898Ratregion
5036615AU04860422334759697747597198Ratregion
5037193RH8086417034680346146803630Ratregion
5037203RH9816124132990735629907596Ratregion
5037221AU02225522035003724250037461Ratregion
5035685SHGC-3509214832994518729945334Ratregion
5028677RH8087215734680346146803617Ratregion
5026126RH13101221333802580838026020Ratregion
5026144RH13108122032941048429410702Ratregion
5034319AA85978020633792450137924706Ratregion
5026338RH13182321134866192348662133Ratregion
5028971RH14302027133664356036643830Ratregion
5031846AU04696112932972136429721492Ratregion
5029101RH14352810034767306747673166Ratregion
5026874RH13385820634539718945398425Ratregion
5032247AU01618114133764818937648329Ratregion
5035234BM38502517834325397943254156Ratregion
5030181BF40134914734449171644491862Ratregion
5033143RH13775716734532787145328037Ratregion
5033341RH13847716132898848128988641Ratregion
5033493RH13903312534061080340610927Ratregion
5033623RH13950318034866211248662291Ratregion
5028396AI31496722933578367435783902Ratregion
5055109RH14361112434846756948467692Ratregion
5051170RH13448018833280579432805980Ratregion
5053553RH14271511633763698237637097Ratregion
5053705RH14280321433763798337638196Ratregion
5051683RH9459713735153280951532945Ratregion
5053829RH14287415033665018536650334Ratregion
5054457RH14323512233767129537671416Ratregion
5055735RH14397212833959539539595522Ratregion
5056345RH14432511234596970445969815Ratregion
5055293RH14371811934591737645917494Ratregion
5052823RH14229415134844270048442850Ratregion
5052879RH14232719233578375035783941Ratregion
5052999RH14239619232985763129857823Ratregion
5053009RH14240120033867728738677486Ratregion
5058426BE09600517433524080635240979Ratregion
5057660BF3924329334451671344516805Ratregion
5053655RH14277418833525440735254594Ratregion
5054031RH14299028132986878229869062Ratregion
5052751RH14225119634335870343358898Ratregion
5052791RH14227516133525697735257137Ratregion
5053057RH14242920934118023741180445Ratregion
5044066RH13039018434591729945917482Ratregion
5045458RH13118918534706079847060991Ratregion
5041784RH12905716234541436245414523Ratregion
5047480RH13235220233791927737919478Ratregion
5048850RH13314218334652297046523151Ratregion
5047912RH13260020034426625144266450Ratregion
5046892RH13201518833743475837434945Ratregion
5048104RH13271021733001490430015120Ratregion
5049676RH13361718433868260138682784Ratregion
5049708RH13363518035113713751137316Ratregion
5048436RH13290219134335745343357642Ratregion
5040470RH12830219833664279436642991Ratregion
5042386RH12940419434656271346562905Ratregion
5042672RH12957521933795092137951139Ratregion
5042760RH12962919134419448244194672Ratregion
5040994RH12860218234828744148287622Ratregion
5043158RH12986521734152625441526461Ratregion
5072560RH13692020133822853538228735Ratregion
5072208RH13671516134636982246369982Ratregion
5075414RH13858019033057729930577488Ratregion
5075414RH13858019033001164730011836Ratregion
5074246RH13790618635106627851066463Ratregion
5074448RH13802313533004413530044269Ratregion
5074566RH13809113034311203143112160Ratregion
5074604RH13811212634443658044436705Ratregion
5075014RH13834916033792098037921139Ratregion
5080686RH14172322033764809137648310Ratregion
5075052RH13837115433743355737433710Ratregion
5079380RH14096219534829022948290423Ratregion
5076222RH13905014334596909045969232Ratregion
5077252RH13964920135158216551582365Ratregion
5077832RH13998522034415120744151426Ratregion
5077840RH13999016333764858037648742Ratregion
5076362RH13913112233665005236650173Ratregion
5077592RH13984519833395465233954849Ratregion
5079778RH14119718332998899729989177Ratregion
5079966RH14130520133792656237926762Ratregion
5078826RH14057420033247768732477886Ratregion
5079184RH14078418533868208738682271Ratregion
5073256RH13733120434632745446327658Ratregion
5078790RH14055319832849730228497499Ratregion
5071204RH13494819034855736348557552Ratregion
5071948RH13537720034655891446559113Ratregion
5071322RH13501518033765214737652326Ratregion
5073672RH13757212332987117329871295Ratregion
5071784RH13528220435120410451204307Ratregion
5063460BI30183816133018939530189555Ratregion
5065044BE10899015032985884629858995Ratregion
5066846AU04811618933912262339122805Ratregion
5067002AU04802320734590130745901513Ratregion
5067458AU04773122434900351349003750Ratregion
5068044AU04738128333429029234290516Ratregion
5070334AI50528611235093766750937778Ratregion
5069734AU04630617134201083142011001Ratregion
5070436AI46173612833868076238680889Ratregion
5070518D2Ertd694e20233374014833740349Ratregion
5063550BE10777915533664148436641638Ratregion
5065984BE11640015133604315236043302Ratregion
5063778AW53515019534651850146518695Ratregion
5065382BE11529415033570722635707375Ratregion
5065788BE10986616834329852143298688Ratregion
5061482BE11186121332992661229926824Ratregion
5087084BQ19288819834855654148556738Ratregion
5087976Kcnj318734118058041180766Ratregion
5083029BF39069315734428501844285174Ratregion
5083399BF39106316133795602537956185Ratregion
5089553AU04922320934596795345968161Ratregion
5083709AI17994119833867728938677486Ratregion
5089699AU04931015634416786444168019Ratregion
5090079AU04953721333880927138809483Ratregion
5084970AA80033016034620681746206980Ratregion
5088201AU04842717235119573851195907Ratregion
5088201AU04842717235119560451195907Ratregion
5090843AU04999622535131128651311506Ratregion
5088327AU04850323332866446728664699Ratregion
5080970RH14188821733538324635383462Ratregion
5088837AU04879923133288712032887350Ratregion
5081240RH14204621334300198343002195Ratregion
5090187AU04960221232876979528770006Ratregion
5086386AW52980016235129657251296733Ratregion
5086679BM38737420333303443733034639Ratregion
5081919BE11875515034085427940854428Ratregion
5081931BE11878215634431093544311090Ratregion
5085966BQ20361415035149610351496252Ratregion
5502922Prpf40a73033868214538682874Ratregion
5502973Nr4a27934311282743113053Ratregion
5503154TBR169434767977247680465Ratregion
5507555D11S256910433651839136518494Ratregion
5503684FIGN__672359534999312649993720Ratregion
5505937Acvr2a14233294789032948031Ratregion
5499741UniSTS:23439214733874230838742454Ratregion
5499687Acvr18334443372844434467Ratregion
5500987PMC109903P2034311302343113696Ratregion
5502082MARC_31635-31636:1045776384:135133303187833032228Ratregion
5499691Acvr2033302476833026336Ratregion
5502786DPP420034829292448293123Ratregion
5503190ksks38827133303191933032189Ratregion
5500571RH13603320234680310346803304Ratregion
5501063PMC133732P146133517788435178344Ratregion
5501904MARC_17149-17150:1028234160:136234619688846197249Ratregion
5501942MARC_17905-17906:1025019334:1033303071033031991Ratregion
Position Markers

Flank 1: (D3Rat49)
Rat AssemblyChrPosition (strand)Source
Rnor_6.0328,136,728 - 28,136,884NCBI
Rnor_5.0333,340,297 - 33,340,453UniSTS
RGSC_v3.4323,762,472 - 23,762,628UniSTS
RGSC_v3.4323,762,471 - 23,762,628RGD
RGSC_v3.1323,658,844 - 23,659,000RGD
Celera325,815,457 - 25,815,613UniSTS
RH 3.4 Map3295.7RGD
RH 3.4 Map3295.7UniSTS
SHRSP x BN Map312.0598RGD
SHRSP x BN Map312.0598UniSTS
Flank 2: (D3Mit8)
Rat AssemblyChrPosition (strand)Source
Rnor_6.0351,687,711 - 51,687,917NCBI
Rnor_5.0358,322,441 - 58,322,647UniSTS
RGSC_v3.4347,588,214 - 47,588,420UniSTS
RGSC_v3.1347,484,585 - 47,484,792RGD
Celera349,895,844 - 49,896,050UniSTS
Cytogenetic Map3q24UniSTS
RH 3.4 Map3615.3UniSTS
RH 3.4 Map3615.3RGD
SHRSP x BN Map335.0198RGD
SHRSP x BN Map335.0198UniSTS
FHH x ACI Map336.02RGD


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
CRRD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70202Alc19Alcohol consumption QTL 192.5drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)3128136884Rat
631545Bp85Blood pressure QTL 853.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3128500807Rat
61468Bp15Blood pressure QTL 154.4blood pressure trait (VT:0000183)pulse pressure (CMO:0000292)3128500807Rat
61468Bp15Blood pressure QTL 154.4blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)3128500807Rat
61468Bp15Blood pressure QTL 154.4blood pressure trait (VT:0000183)diastolic blood pressure (CMO:0000005)3128500807Rat
631831Alc8Alcohol consumption QTL 82.7consumption behavior trait (VT:0002069)calculated ethanol drink intake rate (CMO:0001615)3132972944Rat
4889966Bss95Bone structure and strength QTL 954.4tibia area (VT:1000281)tibia-fibula cross-sectional area (CMO:0001718)3137891710Rat
2312664Scl62Serum cholesterol level QTL 620.05blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)3139773425Rat
2290452Scl56Serum cholesterol level QTL 562.26blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)3195176874Rat
1298526Arunc3Aerobic running capacity QTL 32.2exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)3263142133477544Rat
10401810Kidm53Kidney mass QTL 53kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)3263142148562146Rat
70203Gcr2Gastric cancer resistance QTL 22.6stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)3328592928136884Rat
1358357Srcrtb1Stress Responsive Cort Basal QTL 16.360.002blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)3328592928136884Rat
1558654Bw56Body weight QTL 564.50.0000171body mass (VT:0001259)body weight (CMO:0000012)3600074834394365Rat
6893355Bw101Body weight QTL 1010.40.38body mass (VT:0001259)body weight (CMO:0000012)3600074834394365Rat
6893363Bw105Body weight QTL 1052.60.0036body mass (VT:0001259)body weight (CMO:0000012)3600074834394365Rat
70191BpQTLcluster4Blood pressure QTL cluster 43arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)3600074851687917Rat
70191BpQTLcluster4Blood pressure QTL cluster 43arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)3600074851687917Rat
1558647Cm46Cardiac mass QTL 465.40.0000055heart mass (VT:0007028)heart wet weight (CMO:0000069)3600086634394121Rat
1558650Cm48Cardiac mass QTL 4840.0001heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)3600086634394121Rat
1558657Cm43Cardiac mass QTL 436.60.0000000293heart mass (VT:0007028)heart wet weight (CMO:0000069)3600086634394121Rat
1358905Hrtrt17Heart rate QTL 175.90.000014heart pumping trait (VT:2000009)heart rate (CMO:0000002)31009408193415837Rat
2298542Neuinf11Neuroinflammation QTL 113.9nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)31011931879772001Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)310639528127023997Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)310639528127023997Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)body weight (CMO:0000012)31312691436600143Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)body weight (CMO:0000012)31312691436600143Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)heart rate (CMO:0000002)31312691436600143Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)heart rate (CMO:0000002)31312691436600143Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)31312691436600143Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)31312691436600143Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)31312691436600143Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)31312691436600143Rat
631568Bp92Blood pressure QTL 922.20.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)31312691441510346Rat
2325840Bp345Blood pressure QTL 3450.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)31409041129084626Rat
731172Bp151Blood pressure QTL 1510.04arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)31409041148562146Rat
12879849Bw180Body weight QTL 1800.037body mass (VT:0001259)body weight (CMO:0000012)31409041148562146Rat
12879850Cm91Cardiac mass QTL 910.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)31409041148562146Rat
12879851Cm92Cardiac mass QTL 920.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)31409041148562146Rat
12879852Cm93Cardiac mass QTL 930.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)31409041148562146Rat
12879853Am5Aortic mass QTL 50.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)31409041148562146Rat
12879854Kidm63Kidney mass QTL 630.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)31409041148562146Rat
631676Cm8Cardiac mass QTL 87.030.0001aorta mass (VT:0002845)aorta weight (CMO:0000076)31802366463023664Rat
10450794Scl69Serum cholesterol level QTL 696.30.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)32122380366223803Rat
10450804Scl70Serum cholesterol level QTL 704.70.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)32122380366223803Rat
631685Bp118Blood pressure QTL 1183.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)32465522569655225Rat
10450806Scl71Serum cholesterol level QTL 715.80.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)32477298428136884Rat
10450808Scl72Serum cholesterol level QTL 724.40.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)32477298428136884Rat
10450811Scl73Serum cholesterol level QTL 734.70.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)32477298428136884Rat
1298073Cm13Cardiac mass QTL 132.5heart mass (VT:0007028)heart wet weight (CMO:0000069)32563336639248391Rat
631832Sach1Saccharin preference QTL 12.70.02consumption behavior trait (VT:0002069)calculated saccharin drink intake volume (CMO:0001600)32813672845772990Rat
2313049Bss72Bone structure and strength QTL 722.60.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)32813672851687917Rat
2313076Bss74Bone structure and strength QTL 7420.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)32813672851687917Rat
2313079Bss73Bone structure and strength QTL 731.5tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)32813672851687917Rat
2313093Bmd77Bone mineral density QTL 772.20.0001tibia mineral mass (VT:1000283)cortical volumetric bone mineral density (CMO:0001730)32813672851687917Rat
2313101Bmd76Bone mineral density QTL 763.60.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)32813672851687917Rat
2302055Pia30Pristane induced arthritis QTL 303.50.001blood autoantibody amount (VT:0003725)serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)32932171474321714Rat
9590286Uminl1Urine mineral level QTL 13.50.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)32968273274682732Rat
9590136Scort3Serum corticosterone level QTL 323.370.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)32968273274682732Rat
8552950Pigfal12Plasma insulin-like growth factor 1 level QTL 127.3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)32968273274682732Rat
8694196Abfw2Abdominal fat weight QTL 216.580.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)32968273274682732Rat
8694386Bw159Body weight QTL 1594.520.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)32968273274682732Rat
1354590Despr11Despair related QTL 110.000031locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)32990825574908255Rat
2303593Gluco46Glucose level QTL 463blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)32990825574908255Rat
737818Hcar12Hepatocarcinoma resistance QTL 122.6liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)330114912123700444Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)330846101172879276Rat
2301400Cm68Cardiac mass QTL 680.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)33110358972989078Rat
11565451Bw177Body weight QTL 1770.002body mass (VT:0001259)body weight (CMO:0000012)33110358972989078Rat
11565452Kidm57Kidney mass QTL 570.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)33110358972989078Rat
12879866Cm94Cardiac mass QTL 940.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)33110358972989078Rat
12879867Cm95Cardiac mass QTL 950.047heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)33110358972989078Rat
12879868Am6Aortic mass QTL 60.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)33110358972989078Rat
61356Bp37Blood pressure QTL 373blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)33213099777130997Rat
631647Bp122Blood pressure QTL 1226.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)33213099777130997Rat
1300169Bp177Blood pressure QTL 1772.96arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)33347735462922975Rat
1354589Bw31Body weight QTL 313.3body mass (VT:0001259)body weight (CMO:0000012)33347735481136227Rat
1354604Bw36Body weight QTL 362.9body mass (VT:0001259)body weight (CMO:0000012)333477354108914061Rat
61419Cia11Collagen induced arthritis QTL 115.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)334394121103141944Rat
10450813Scl74Serum cholesterol level QTL 745.80.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)33924839152182792Rat
10450852Stl33Serum triglyceride level QTL 333.40.05blood LDL triglyceride amount (VT:0010699)blood lipoprotein triglyceride level (CMO:0002685)33924839152182792Rat
10450816Scl75Serum cholesterol level QTL 754.40.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)33924839152182792Rat
1358362Srcrt2Stress Responsive Cort QTL 22.78blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)339248391140271184Rat
4889975Bmd81Bone mineral density QTL 814.3tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)33977324751687917Rat
738019Anxrr10Anxiety related response QTL 103.9exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)34042292185422921Rat
634317Bw117Body weight QTL 1173.58abdominal fat pad mass (VT:1000711)abdominal fat pad weight to body weight ratio (CMO:0000095)34052359354745780Rat
2302276Bw82Body weight QTL 824.32body mass (VT:0001259)body weight (CMO:0000012)34052359364880586Rat
1331777Bw24Body weight QTL 243.503body mass (VT:0001259)body weight (CMO:0000012)34052359392654473Rat
1331795Rf30Renal function QTL 303.708urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)34052359392654473Rat
1354597Kidm13Kidney mass QTL 132.9kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)343295930108914061Rat
2301970Bw81Body weight QTL 815.19body mass (VT:0001259)body weight (CMO:0000012)343295930163640485Rat
2301971Cm71Cardiac mass QTL 714.63heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)343295930163640485Rat
1300178Hrtrt4Heart rate QTL 43.74heart pumping trait (VT:2000009)heart rate (CMO:0000002)34540605894467785Rat
1581503Cm58Cardiac mass QTL 582.70.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)345406058127023997Rat
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)345406058177699992Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)348561928155263151Rat
1358186Ept2Estrogen-induced pituitary tumorigenesis QTL 28.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)348562146115249962Rat
2292613Ept16Estrogen-induced pituitary tumorigenesis QTL 168.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)348562146115249962Rat


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_cross_type intercross  
qtl_general number of animals used: 98 females 2312767
qtl_general software used:one-way ANOVA and MAP MANAGER/QTX 2312767
qtl_general measurement method: in the last 3 months modified fat-enriched chow was given; animals were killed at 215 days of age; cortical diaphyseal bone was measured and meta total vBMD (g/cm3) determined by pQCT (peripheral quantitative computed tomography) 2312767
qtl_general lineage: 2 seperate F2 intercrosses were generated one from grandmaternal GK and grandpaternal F344 other from grandmaternal F344 and grandpaternal GK 2312767