| 1000 | 1301048 | Actre2_m | activity response to ethanol 2 (mouse) | | | Not determined | | 2 | 63175610 | 97175769 | Mouse | n/a | region | qtl |
| 1000 | 1301235 | Alcw4_m | alcohol withdrawal 4 (mouse) | | | Not determined | | 2 | 48439402 | 82439590 | Mouse | n/a | region | qtl |
| 1000 | 4141406 | Alpq2_m | alcohol preference QTL 2 (mouse) | | | Not determined | | 2 | 57693773 | 91693944 | Mouse | n/a | region | qtl |
| 1000 | 1301402 | Ap2q_m | alcohol preference 2 QTL (mouse) | | | Not determined | | 2 | 43690268 | 77690412 | Mouse | n/a | region | qtl |
| 1000 | 1301703 | Bomd3_m | bone mineral density 3 (mouse) | | | Not determined | | 2 | 63175610 | 97175769 | Mouse | n/a | region | qtl |
| 1000 | 1300577 | Capsq1_m | capsaicin sensitivity related QTL 1 (mouse) | | | Not determined | | 2 | 27712048 | 84183040 | Mouse | n/a | region | qtl |
| 1000 | 1300788 | Cia2_m | collagen induced arthritis QTL 2 (mouse) | | | Not determined | | 2 | 43690268 | 77690412 | Mouse | n/a | region | qtl |
| 1000 | 1300671 | Cia4_m | collagen induced arthritis QTL 4 (mouse) | | | Not determined | | 2 | 43690268 | 77690412 | Mouse | n/a | region | qtl |
| 1000 | 1301374 | Cplaq7_m | circadian period of locomotor activity 7 (mouse) | | | Not determined | | 2 | 76591138 | 110591306 | Mouse | n/a | region | qtl |
| 1000 | 1301109 | Dntcs2_m | dental caries susceptibility 2 (mouse) | | | Not determined | | 2 | 40995481 | 115079684 | Mouse | n/a | region | qtl |
| 1000 | 1302174 | Dssc2_m | dextran sodium sulfate induced colitis QTL2 (mouse) | | | Not determined | | 2 | 24334620 | 148858457 | Mouse | n/a | region | qtl |
| 1000 | 1301747 | Eae21_m | experimental allergic encephalomyelitis 21 (mouse) | | | Not determined | | 2 | 48439402 | 82439590 | Mouse | n/a | region | qtl |
| 1000 | 1558899 | Egq1_m | early growth QTL 1 (mouse) | | | Not determined | | 2 | 20892967 | 119064359 | Mouse | n/a | region | qtl |
| 1000 | 1301948 | Elsgp3_m | elevated serum gp70 3 (mouse) | | | Not determined | | 2 | 68893925 | 102894063 | Mouse | n/a | region | qtl |
| 1000 | 1357881 | Estoq1_m | embryo survival total QTL 1 (mouse) | | | Not determined | | 2 | 20892967 | 119064359 | Mouse | n/a | region | qtl |
| 1000 | 1301882 | Etohc2_m | ethanol consumption 2 (mouse) | | | Not determined | | 2 | 68893925 | 102894063 | Mouse | n/a | region | qtl |
| 1000 | 1300662 | Etohila_m | ethanol induced locomotor activity (mouse) | | | Not determined | | 2 | 63175610 | 97175769 | Mouse | n/a | region | qtl |
| 1000 | 1301405 | Etohr_m | ethanol response acute (mouse) | | | Not determined | | 2 | 63175610 | 97175769 | Mouse | n/a | region | qtl |
| 1000 | 13464141 | Hbbcq3_m | hemoglobin concentration QTL 3 (mouse) | | | | | 2 | 52617675 | 86617792 | Mouse | n/a | region | qtl |
| 1000 | 4141236 | Hbnr5_m | Heligmosomoides bakeri nematode resistance 5 (mouse) | | | Not determined | | | 31324555 | 105313225 | Mouse | n/a | region | qtl |
| 1000 | 13463471 | Hctq6_m | hematocrit QTL 6 (mouse) | | | | | 2 | 52617675 | 86617792 | Mouse | n/a | region | qtl |
| 1000 | 1300568 | Hdl1_m | high density lipoprotein (HDL) level 1 (mouse) | | | Not determined | | 2 | 48439402 | 82439590 | Mouse | n/a | region | qtl |
| 1000 | 10044002 | Hdl7_m | HDL level 7 (mouse) | | | Not determined | | 2 | 63175610 | 97175769 | Mouse | n/a | region | qtl |
| 1000 | 1357681 | Hrtq1_m | heart weight QTL 1 (mouse) | | | Not determined | | 2 | 20892967 | 119064359 | Mouse | n/a | region | qtl |
| 1000 | 1301873 | Hsl1_m | hyperoxia susceptibility locus 1 (mouse) | | | Not determined | | 2 | 63739810 | 97739957 | Mouse | n/a | region | qtl |
| 1000 | 1301660 | Iba1_m | induction of brown adipocytes 1 (mouse) | | | Not determined | | 2 | 67817543 | 101817798 | Mouse | n/a | region | qtl |
| 1000 | 1357454 | Kidq1_m | kidney weight QTL 1 (mouse) | | | Not determined | | 2 | 20892967 | 119064359 | Mouse | n/a | region | qtl |
| 1000 | 12738429 | Lfibq18_m | liver fibrosis QTL 18 (mouse) | | | | | 2 | 58089647 | 92089647 | Mouse | n/a | region | qtl |
| 1000 | 1300761 | Lgth1_m | body length 1 (mouse) | | | Not determined | | 2 | 51872932 | 85873081 | Mouse | n/a | region | qtl |
| 1000 | 1301344 | Lith1_m | lithogenic gene 1 (mouse) | | | Not determined | | 2 | 45457623 | 145470727 | Mouse | n/a | region | qtl |
| 1000 | 10053681 | Lith24_m | lithogenic gene 24 (mouse) | | | Not determined | | 2 | 63175610 | 97175769 | Mouse | n/a | region | qtl |
| 1000 | 1357829 | Lvrq1_m | liver weight QTL 1 (mouse) | | | Not determined | | 2 | 20892967 | 119064359 | Mouse | n/a | region | qtl |
| 1000 | 10755526 | Lymph1_m | lymphocyte differential 1 (mouse) | | | | | 2 | 50988970 | 84988970 | Mouse | n/a | region | qtl |
| 1000 | 10755532 | Lymph5_m | lymphocyte differential 5 (mouse) | | | | | 2 | 44368673 | 78368673 | Mouse | n/a | region | qtl |
| 1000 | 13463482 | Mchq17_m | mean corpuscular hemoglobin QTL 17 (mouse) | | | | | 2 | 67817543 | 101817798 | Mouse | n/a | region | qtl |
| 1000 | 1302085 | Mobe1_m | modifier of obesity 1 (mouse) | | | Not determined | | 2 | 48439402 | 82439590 | Mouse | n/a | region | qtl |
| 1000 | 5491197 | Mobq5_m | multigenic obesity QTL 5 (mouse) | | | Not determined | | 2 | 65439402 | 162677006 | Mouse | n/a | region | qtl |
| 1000 | 4141657 | Mohg1_m | modifier of hg 1 (mouse) | | | Not determined | | 2 | 76848414 | 103265478 | Mouse | n/a | region | qtl |
| 1000 | 1558820 | Moo1_m | modifier of Odc1 (mouse) | | | Not determined | | 17 | 48439402 | 82439590 | Mouse | n/a | region | qtl |
| 1000 | 1301769 | Orgwq2_m | organ weight QTL 2 (mouse) | | | Not determined | | 2 | 3886089 | 93591306 | Mouse | n/a | region | qtl |
| 1000 | 4142088 | Parms1_m | patched associated RMS 1 (mouse) | | | Not determined | | | 74693773 | 114293051 | Mouse | n/a | region | qtl |
| 1000 | 11532740 | Pbwg1.10_m | postnatal body weight growth 1.10 (mouse) | | | | | 2 | 48302068 | 82302151 | Mouse | n/a | region | qtl |
| 1000 | 4141809 | Pbwg1.1_m | postnatal body weight growth 1.1 (mouse) | | | Not determined | | | 48302068 | 82302151 | Mouse | n/a | region | qtl |
| 1000 | 4142299 | Pbwg1.4_m | postnatal body weight growth 1.4 (mouse) | | | Not determined | | | 55624072 | 89624172 | Mouse | n/a | region | qtl |
| 1000 | 4141069 | Pbwg1.5_m | postnatal body weight growth 1.5 (mouse) | | | Not determined | | | 43690268 | 77690412 | Mouse | n/a | region | qtl |
| 1000 | 1301411 | Pitm1_m | prion incubation time 1 (mouse) | | | Not determined | | 2 | 43690268 | 77690412 | Mouse | n/a | region | qtl |
| 1000 | 11528549 | Sluc31_m | susceptibility to lung cancer 31 (mouse) | | | | | 2 | 74693773 | 129371085 | Mouse | n/a | region | qtl |
| 1000 | 1357436 | Splq1_m | spleen weight QTL 1 (mouse) | | | Not determined | | 2 | 20892967 | 119064359 | Mouse | n/a | region | qtl |
| 1000 | 4141854 | T2dm2sa_m | type 2 diabetes mellitus 2 in SMXA RI mice (mouse) | | | Not determined | | 2 | 29417935 | 148533014 | Mouse | n/a | region | qtl |
| 1000 | 1300875 | Taste1_m | taste-saccharin preference 1 (mouse) | | | Not determined | | 2 | 51092831 | 85092934 | Mouse | n/a | region | qtl |
| 1000 | 1357577 | Trmq3_m | T cell ratio modifier QTL 3 (mouse) | | | Not determined | | 2 | 60690268 | 119525037 | Mouse | n/a | region | qtl |
| 1000 | 13824983 | Vclq1_m | curvilinear velocity QTL 1 (mouse) | | | | | 2 | 62000000 | 137000000 | Mouse | n/a | region | qtl |
| 1000 | 1558966 | W10q9_m | weight 10 weeks QTL 9 (mouse) | | | Not determined | | 2 | 20892967 | 119064359 | Mouse | n/a | region | qtl |
| 1000 | 1558915 | W3q1_m | weight 3 weeks QTL 1 (mouse) | | | Not determined | | 2 | 20892967 | 119064359 | Mouse | n/a | region | qtl |
| 1000 | 1558738 | W6q1_m | weight 6 weeks QTL 1 (mouse) | | | Not determined | | 2 | 20892967 | 119064359 | Mouse | n/a | region | qtl |