| 1000 | 1641904 | Alcrsp4 | Alcohol response QTL 4 | | | response to alcohol trait (VT:0010489) | duration of loss of righting reflex (CMO:0002289) | 6 | 71206251 | 116206251 | Rat | n/a | region | qtl |
| 1000 | 738034 | Anxrr5 | Anxiety related response QTL 5 | 5.9 | | exploratory behavior trait (VT:0010471) | percentage of entries into a discrete space in an experimental apparatus (CMO:0000961) | 6 | 88507712 | 133507712 | Rat | n/a | region | qtl |
| 1000 | 1331799 | Bp211 | Blood pressure QTL 211 | 3.66407 | | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 6 | 75623277 | 136426962 | Rat | n/a | region | qtl |
| 1000 | 70196 | BpQTLcluster7 | Blood pressure QTL cluster 7 | 6.82 | | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 6 | 75623277 | 120623277 | Rat | n/a | region | qtl |
| 1000 | 1558641 | Cm47 | Cardiac mass QTL 47 | 2.9 | 0.001 | heart mass (VT:0007028) | heart wet weight (CMO:0000069) | 6 | 60606431 | 108154445 | Rat | n/a | region | qtl |
| 1000 | 6893332 | Cm74 | Cardiac mass QTL 74 | 0.4 | 0.64 | heart mass (VT:0007028) | heart weight to body weight ratio (CMO:0000074) | 6 | 60606431 | 108154445 | Rat | n/a | region | qtl |
| 1000 | 1576309 | Emca7 | Estrogen-induced mammary cancer QTL 7 | 4 | | mammary gland integrity trait (VT:0010552) | mammary tumor number (CMO:0000343) | 6 | 2537030 | 111715717 | Rat | n/a | region | qtl |
| 1000 | 1300075 | Glom7 | Glomerulus QTL 7 | 5.6 | 0.0000002 | kidney glomerulus morphology trait (VT:0005325) | count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002) | 6 | 75449871 | 120449871 | Rat | n/a | region | qtl |
| 1000 | 1300076 | Glom8 | Glomerulus QTL 8 | 7 | 0.000000009 | kidney glomerulus morphology trait (VT:0005325) | count of superficial glomeruli directly contacting the kidney surface (CMO:0001001) | 6 | 91703409 | 136703409 | Rat | n/a | region | qtl |
| 1000 | 10054138 | Gmadr3 | Adrenal mass QTL 3 | 3.68 | 0.00045 | adrenal gland mass (VT:0010420) | both adrenal glands wet weight (CMO:0000164) | 6 | 89631358 | 134631358 | Rat | n/a | region | qtl |
| 1000 | 737827 | Hcar11 | Hepatocarcinoma resistance QTL 11 | 4.4 | | liver integrity trait (VT:0010547) | liver tumorous lesion number (CMO:0001068) | 6 | 86422697 | 115379601 | Rat | n/a | region | qtl |
| 1000 | 2293837 | Kiddil1 | Kidney dilation QTL 1 | 3.7 | | kidney pelvis morphology trait (VT:0004194) | hydronephrosis severity score (CMO:0001208) | 6 | 84763275 | 108464097 | Rat | n/a | region | qtl |
| 1000 | 2293842 | Kiddil3 | Kidney dilation QTL 3 | 4.3 | | kidney pelvis morphology trait (VT:0004194) | hydronephrosis severity score (CMO:0001208) | 6 | 84763275 | 108464097 | Rat | n/a | region | qtl |
| 1000 | 4145119 | Mcs25 | Mammary carcinoma susceptibility QTL 25 | | 0.0001 | mammary gland integrity trait (VT:0010552) | percentage of deaths in a study population during a period of time (CMO:0001024) | 6 | 7009971 | 115379601 | Rat | n/a | region | qtl |
| 1000 | 70176 | Mcsm1 | Mammary carcinoma susceptibility modifier QTL 1 | | | mammary gland integrity trait (VT:0010552) | mammary tumor number (CMO:0000343) | 6 | 62263348 | 107263348 | Rat | n/a | region | qtl |
| 1000 | 634330 | Pia16 | Pristane induced arthritis QTL 16 | 3.9 | | joint integrity trait (VT:0010548) | arthritic paw count (CMO:0001460) | 6 | 48432758 | 108268790 | Rat | n/a | region | qtl |
| 1000 | 4889848 | Pur25 | Proteinuria QTL 25 | 14 | 0.003 | total urine protein amount (VT:0000032) | urine total protein excretion rate (CMO:0000756) | 6 | 59803065 | 94001333 | Rat | n/a | region | qtl |
| 1000 | 1581550 | Pur8 | Proteinuria QTL 8 | | | total urine protein amount (VT:0000032) | urine total protein excretion rate (CMO:0000756) | 6 | 75623393 | 136142742 | Rat | n/a | region | qtl |
| 1000 | 1331789 | Rf37 | Renal function QTL 37 | 3.224 | | kidney blood vessel physiology trait (VT:0100012) | absolute change in renal vascular resistance (CMO:0001900) | 6 | 75623277 | 120276465 | Rat | n/a | region | qtl |
| 1000 | 1576302 | Schws4 | Schwannoma susceptibility QTL 4 | | 0.0078 | nervous system integrity trait (VT:0010566) | percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017) | 6 | 87418448 | 111129520 | Rat | n/a | region | qtl |
| 1000 | 12801471 | Schws9 | Schwannoma susceptibility QTL 9 | | | nervous system integrity trait (VT:0010566) | percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017) | 6 | 66129520 | 111129520 | Rat | n/a | region | qtl |
| 1000 | 10054123 | Srcrt6 | Stress Responsive Cort QTL 6 | 2.5 | 0.0043 | blood corticosterone amount (VT:0005345) | plasma corticosterone level (CMO:0001173) | 6 | 89631358 | 134631358 | Rat | n/a | region | qtl |
| 1000 | 724513 | Uae14 | Urinary albumin excretion QTL 14 | 6.5 | | urine albumin amount (VT:0002871) | urine albumin excretion rate (CMO:0000757) | 6 | 88996335 | 139410483 | Rat | n/a | region | qtl |
| 1000 | 724524 | Uae2 | Urinary albumin excretion QTL 2 | 2.7 | 0.0005 | urine albumin amount (VT:0002871) | urine albumin excretion rate (CMO:0000757) | 6 | 76902247 | 114203334 | Rat | n/a | region | qtl |
| 1000 | 731173 | Uae22 | Urinary albumin excretion QTL 22 | 10.1 | | urine albumin amount (VT:0002871) | urine albumin excretion rate (CMO:0000757) | 6 | 68781170 | 147991367 | Rat | n/a | region | qtl |
| 1000 | 1581563 | Uae33 | Urinary albumin excretion QTL 33 | | | urine albumin amount (VT:0002871) | urine albumin excretion rate (CMO:0000757) | 6 | 75623393 | 136142742 | Rat | n/a | region | qtl |
| 1000 | 2290393 | Uae37 | Urinary albumin excretion QTL 37 | | 0.0001 | urine albumin amount (VT:0002871) | urine albumin excretion rate (CMO:0000757) | 6 | 68781170 | 147991367 | Rat | n/a | region | qtl |
| 1000 | 724536 | Uae7 | Urinary albumin excretion QTL 7 | 3.5 | | urine albumin amount (VT:0002871) | urine albumin level (CMO:0000130) | 6 | 75623277 | 136143011 | Rat | n/a | region | qtl |
| 1000 | 2303624 | Vencon5 | Ventilatory control QTL 5 | 4.45 | | respiration trait (VT:0001943) | minute ventilation (VE) (CMO:0000132) | 6 | 92879510 | 137879510 | Rat | n/a | region | qtl |